Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27341663
|
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER89547 | Sorghum | nucleus | 90.2 | 89.9 |
| Os06t0256200-01 | Rice | nucleus | 73.2 | 76.19 |
| TraesCS7D01G207200.1 | Wheat | nucleus | 70.59 | 71.76 |
| HORVU7Hr1G041520.2 | Barley | nucleus | 70.26 | 71.43 |
| TraesCS7B01G111100.1 | Wheat | nucleus | 69.93 | 71.1 |
| TraesCS7A01G204100.1 | Wheat | nucleus | 69.61 | 70.76 |
| GSMUA_Achr5P05950_001 | Banana | nucleus | 45.42 | 50.92 |
| Zm00001d050357_P005 | Maize | plasma membrane | 44.12 | 50.19 |
| VIT_14s0006g01020.t01 | Wine grape | nucleus | 44.12 | 50.19 |
| GSMUA_Achr2P18730_001 | Banana | nucleus | 49.67 | 49.51 |
| Solyc11g011130.1.1 | Tomato | nucleus | 44.77 | 48.41 |
| PGSC0003DMT400040562 | Potato | nucleus | 44.44 | 48.23 |
| Solyc04g014460.2.1 | Tomato | nucleus | 42.48 | 47.79 |
| KRG97938 | Soybean | nucleus | 45.75 | 46.98 |
| KRH30937 | Soybean | nucleus | 45.1 | 46.31 |
| PGSC0003DMT400060737 | Potato | nucleus | 41.5 | 46.01 |
| CDY01711 | Canola | nucleus | 37.58 | 39.25 |
| AT5G37720.1 | Thale cress | nucleus | 36.27 | 38.54 |
| CDY49635 | Canola | nucleus, plastid | 34.97 | 37.15 |
| Bra004158.1-P | Field mustard | nucleus, plastid | 34.97 | 37.15 |
| CDY07496 | Canola | nucleus, plastid | 34.97 | 37.15 |
| AT1G66260.1 | Thale cress | nucleus | 35.29 | 36.61 |
| Zm00001d019234_P002 | Maize | extracellular | 28.76 | 35.34 |
| Zm00001d028655_P001 | Maize | extracellular, mitochondrion | 29.09 | 35.18 |
| Bra028145.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 29.74 | 35.0 |
| CDX74565 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 29.74 | 35.0 |
| Zm00001d005179_P001 | Maize | plastid | 22.88 | 33.49 |
| Zm00001d047794_P001 | Maize | nucleus | 24.18 | 29.13 |
Protein Annotations
| EntrezGene:100280336 | MapMan:16.11.1.2 | Gene3D:3.30.70.330 | ProteinID:AQK83726.1 | UniProt:B4FWP1 | EMBL:BT041529 |
| EMBL:BT056034 | InterPro:FoP_C | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR19965 |
| PANTHER:PTHR19965:SF27 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SMART:SM01218 | SUPFAM:SSF54928 |
| UniParc:UPI00017B7FC9 | EnsemblPlantsGene:Zm00001d037352 | EnsemblPlants:Zm00001d037352_P001 | EnsemblPlants:Zm00001d037352_T001 | SEG:seg | : |
Description
THO complex subunit 4C
Coordinates
chr6:-:122505883..122518536
Molecular Weight (calculated)
33075.2 Da
IEP (calculated)
11.648
GRAVY (calculated)
-0.637
Length
306 amino acids
Sequence
(BLAST)
(BLAST)
001: MATPLDVPLD DLIKSRAGRG TGRGRGQGGG RGRGDGQRLA RGSWRGRGTG NFRERGLGVS SRRPLGVNTW SSSFAIAKSF NKAKDFVWRH DLFEDSMVAA
101: GLSGIESGTK LYISNLHYGV TSEDLQELFS EMGHLKHCAV HYDSYRHPTG SAEVIFTRRS EALAALKRYN NMRLDGKAMK IEVIGAELGL SAAAVPQISV
201: VPGASRRGQR EVVMMPGGSG FGQGASGPSS SLPGWKRGGF VRRGQGRVSF PQRGRGQVRS RGRGRGRSSF VQSRGRGYVR RGNAEKSAKQ LDNELDNYNS
301: GAMNVD
101: GLSGIESGTK LYISNLHYGV TSEDLQELFS EMGHLKHCAV HYDSYRHPTG SAEVIFTRRS EALAALKRYN NMRLDGKAMK IEVIGAELGL SAAAVPQISV
201: VPGASRRGQR EVVMMPGGSG FGQGASGPSS SLPGWKRGGF VRRGQGRVSF PQRGRGQVRS RGRGRGRSSF VQSRGRGYVR RGNAEKSAKQ LDNELDNYNS
301: GAMNVD
001: MSGALNMTLD EIVKRGKTAR SGGRGISRGR GRGRGGGGRG AGPARRGPLA VNARPSSFTI NKPVRRVRSL PWQSGLFEDG LRAAGASGVE VGTRLHVTNL
101: DQGVTNEDIR ELFSEIGEVE RYAIHYDKNG RPSGTAEVVY PRRSDAFQAL KKYNNVLLDG RPMRLEILGG NNSSEAPLSG RVNVNVTGLN GRLKRTVVIQ
201: QGGGGRGRVR GGRGGRGPAP TVSRRLPIHN QQGGGMRGGR GGFRARGRGN GGRGRGGGRG NGKKPVEKSA ADLDKDLESY HADAMNTS
101: DQGVTNEDIR ELFSEIGEVE RYAIHYDKNG RPSGTAEVVY PRRSDAFQAL KKYNNVLLDG RPMRLEILGG NNSSEAPLSG RVNVNVTGLN GRLKRTVVIQ
201: QGGGGRGRVR GGRGGRGPAP TVSRRLPIHN QQGGGMRGGR GGFRARGRGN GGRGRGGGRG NGKKPVEKSA ADLDKDLESY HADAMNTS
Arabidopsis Description
ALY4THO complex subunit 4D [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ72]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.