CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92463
EER98238
OQU75650
OQU80698

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27060.1	EER92463	AT5G02530.1	21798944
AT4G27060.1	EER98238	AT5G02530.1	21798944
AT4G27060.1	OQU75650	AT5G02530.1	21798944
AT4G27060.1	OQU80698	AT5G22890.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021641_P002	Maize	plastid	90.02	89.54
Zm00001d006504_P005	Maize	plastid	86.44	85.79
Os07t0520400-01	Rice	cytosol, mitochondrion, nucleus, plastid	79.61	82.01
HORVU2Hr1G046160.2	Barley	cytosol, plastid	60.74	80.34
TraesCS2B01G246900.8	Wheat	plastid	76.68	80.07
TraesCS2A01G221200.6	Wheat	plastid	76.36	79.55
TraesCS2D01G226900.1	Wheat	plastid	76.25	79.44
GSMUA_Achr9P11640_001	Banana	cytosol	52.93	56.68
GSMUA_Achr9P02790_001	Banana	plastid	42.41	52.2
VIT_19s0090g00020.t01	Wine grape	plastid	49.02	48.19
KRG98830	Soybean	plastid	46.85	46.8
PGSC0003DMT400037390	Potato	plastid	43.6	46.64
Solyc10g006350.2.1	Tomato	plastid	43.17	46.06
KRH46114	Soybean	plastid	45.44	45.25
CDY29609	Canola	cytosol	36.01	42.95
Bra030470.1-P	Field mustard	cytosol	36.01	42.95
AT1G50890.1	Thale cress	plastid	36.77	41.29
CDY29271	Canola	plastid	38.29	41.0
AT4G27060.1	Thale cress	plastid	37.64	40.16
CDY07335	Canola	cytosol	34.92	38.84
CDX89282	Canola	plastid	38.07	36.91
Bra026382.1-P	Field mustard	plastid	37.96	35.5
EES05553	Sorghum	cytosol	15.94	23.86
EER99353	Sorghum	cytosol	21.58	23.78
KXG19701	Sorghum	cytosol	15.4	22.94

Protein Annotations

Gene3D:1.25.10.10	MapMan:20.1.5.3	EntrezGene:8084051	InterPro:ARM-like	InterPro:ARM-type_fold	UniProt:C5XA32
ncoils:Coil	EnsemblPlants:EER99458	ProteinID:EER99458	ProteinID:EER99458.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856
GO:GO:0005874	GO:GO:0007275	GO:GO:0008017	GO:GO:0008150	GO:GO:0009653	GO:GO:0009826
GO:GO:0009987	GO:GO:0010005	GO:GO:0010031	GO:GO:0016043	GO:GO:0016049	GO:GO:0040007
InterPro:IPR011989	PANTHER:PTHR31355	PANTHER:PTHR31355:SF7	EnsemblPlantsGene:SORBI_3002G320600	SUPFAM:SSF48371	unigene:Sbi.18933
InterPro:TORTIFOLIA1/SPIRAL2-like	UniParc:UPI0001A840CA	RefSeq:XP_002462937.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:-:69195391..69202649

Molecular Weight (calculated)

98728.5 Da

IEP (calculated)

5.301

GRAVY (calculated)

-0.517

Length

922 amino acids

Sequence
(BLAST)

001: MATALSKSAV KSHPRSPTTA QPPTTPNPGS SAASAGGGAA PPPPSSAAAG AAPSKNAAMA ELKSRVLAAL AKLSDRDTHH IAVEELDRII RAPPSTDAVP
101: MLLNALASDS QGLASPARRE SLRLLATLCA SHPDAAAPHL HKVLAHLARR LKDPASDTSV RDACRDVAGQ LAAVYLRPLS ASGVAEAGNA TVTLFVKPLF
201: EVMGEQSKAV QGGAAACLAK AVEGAGPGPG AIGMFGKLGP RICKLLSGQG VQAKAALLGV MGSLAQVGAI SSQNMQQTLQ SIRDCLENSD WATRKAAADT
301: LCVFATHSGH LIGDGTAPTI AALEACRFDK VRPVRDSMID AVQLWKKLSG EDGNADGRNK DLADGEGKLD SRRSMQRGGR SESFDDSSPD SPSNNVKGSS
401: IAEKAAVLLK KRPTLTDREL NPEFFQKLET RKTDDLAVEV VVPRKTLQSH LRSEGDTEED DDPVGPVDSN GSAEDEANLT QMRASSNFQN IRDKWAGQRG
501: NRNKDTKART ADVEDRGEPS TKDSTAATMN IPGEGPFINN KTNWLAIQRQ LTHLERQQTS LMNMLQDFMG GSHDSMVTLE NRVRGLERVV EEMAREISLS
601: SGRRGGGPAL GFDSSPGRSS KYNGFHEYSN SKFGRGGDGR MGFAERYFSA DGMASGTKNP SWRPDSEPWD SYAYSGSRSG MNARRGLDPV SSDNRMPRNE
701: RSNDQAGPRR GWDKGQGPFR FGEGPSARSA WRASKDEATL EAIRVAGEDN GNIRATARVA IPELDGEALN DDNQGDERGP LWEAWTRAMD AVHVDDMDSA
801: YAEVLSTGDA ELLVKLMEQT GPVVDQLSNE VANEVLHAVG QFLVEESFYD VALNWLQQLT DLVMENGSDY LGIPLDAKQD LLLGLHEATA IELPDDWEGA
901: TPMQIMKQLA SSWRIDLQQL IN

Best Arabidopsis Sequence Match ( AT4G27060.1 )
(BLAST)

001: MSTPTTSGSA AKPTRPARSS SLATRSCSNS GSLTSFQAMV ELKQKILTSI SKLADRDTYQ IAVEDLEKTI QSLTPETLPM FLNCLYDSCS DPKPAVKKEC
101: LHLLSYVCSL HCDSTAAHLT KIIAQIVKRL KDSDSGVRDA CRDTIGALSG IYLKGKEEGT NTGSASLAVG LFVKPLFEAM GEQNKVVQSG ASMCMARMVE
201: SAASPPVTSF QKLCPRICKL LSNSSFLAKA SLLPVVSSLS QVGAIAPQSL ESLLESIHDC LGSTDWVTRK AAAETLTALA SHSSGLIKEK TDSTITVLET
301: CRFDKIKPVR ESVTEALQLW KKISGKYVDG ASDDSKLSAS EQLGSEKNGE KRSNLADLMK KEASDGSTLS PDSASKGKGC FPEKAVGLLK KKAPVLSDKD
401: FNPEFFQRLE RRQSVEVVVP RRCKNNDEEE SGLDDLNAMG SSNRLKNTQA DDKQVKGRFD GNGSQARTSG DDKAGVVNGK ETPGHHAPVS NTDNQSEGSF
501: TSNRGNWSAI QRQLLQLERQ QTNLMNMLQE FIGGSHDSMV TLEGRVRGLE RIVEDMARDL SISSGRRANL TAGFGKYNSF ANYPTGKYNG RAPGERGSQT
601: DGAMRGRMWN SDMADDWFIP PHAASRNGQA GPRRSPRSEQ YENEHMGNGR RGWDNKASGT IRFGEGPSAR SVWQASKDEA TLEAIRVAGE DGAVPRPTRV
701: AVAPEAEAMG DDDNEGQERD PIWVSWSNAM HSLRVGDIDA AYAEVLCAGD QHLVIKLMDK TGPSLDQMSN EIANEALNFI SQFLLDHSLY DICLSWSQQL
801: LELVLQDGAD TFGVPMELKT EILYNLQDAC STMDPPEDWE GPAPEQLVVQ LASVWEIDLQ QFDK

Arabidopsis Description

TOR1Microtubule-associated protein TORTIFOLIA1 [Source:UniProtKB/Swiss-Prot;Acc:Q9T041]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.