Factsheet for Os07t0520400-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0278300-02
Os04t0165200-01
Os07t0237100-00
Os08t0562300-01
Os11t0100200-00
Os12t0100100-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27060.1	Os03t0278300-02	AT5G02530.1	21798944
AT4G27060.1	Os07t0237100-00	AT5G02530.1	21798944
AT4G27060.1	Os11t0100200-00	AT5G02530.1	21798944
AT4G27060.1	Os12t0100100-01	AT5G02530.1	21798944
AT4G27060.1	Os04t0165200-01	AT5G22890.1	21798944
AT4G27060.1	Os08t0562300-01	AT5G22890.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G046160.2	Barley	cytosol, plastid	65.81	84.5
TraesCS2B01G246900.8	Wheat	plastid	80.56	81.65
EER99458	Sorghum	plastid	82.01	79.61
Zm00001d021641_P002	Maize	plastid	82.12	79.29
TraesCS2D01G226900.1	Wheat	plastid	77.88	78.76
TraesCS2A01G221200.6	Wheat	plastid	77.65	78.53
Zm00001d006504_P005	Maize	plastid	74.64	71.91
GSMUA_Achr9P11640_001	Banana	cytosol	55.31	57.49
GSMUA_Achr9P02790_001	Banana	plastid	43.24	51.67
VIT_19s0090g00020.t01	Wine grape	plastid	51.06	48.72
PGSC0003DMT400037390	Potato	plastid	45.36	47.1
Solyc10g006350.2.1	Tomato	plastid	44.36	45.95
KRG98830	Soybean	plastid	47.37	45.94
KRH46114	Soybean	plastid	47.04	45.46
Bra030470.1-P	Field mustard	cytosol	37.21	43.08
CDY29609	Canola	cytosol	36.98	42.82
AT1G50890.1	Thale cress	plastid	37.21	40.56
AT4G27060.1	Thale cress	plastid	38.77	40.16
CDY29271	Canola	plastid	38.55	40.07
CDY07335	Canola	cytosol	36.2	39.08
CDX89282	Canola	plastid	38.32	36.07
Bra026382.1-P	Field mustard	plastid	38.32	34.79
Os09t0560000-01	Rice	cytosol	22.68	24.37
Os02t0739900-01	Rice	cytosol, mitochondrion	15.75	23.04
Os06t0244700-01	Rice	cytosol	13.41	22.73

Protein Annotations

Gene3D:1.25.10.10	MapMan:20.1.5.3	EntrezGene:4343400	EMBL:AK241222	InterPro:ARM-like	InterPro:ARM-type_fold
ProteinID:BAC19987.1	ProteinID:BAT01802.1	ncoils:Coil	ProteinID:EEE67285.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005856	GO:GO:0005874	GO:GO:0006508	GO:GO:0007275	GO:GO:0008017	GO:GO:0008150
GO:GO:0008152	GO:GO:0008233	GO:GO:0009653	GO:GO:0009826	GO:GO:0009987	GO:GO:0010005
GO:GO:0010031	GO:GO:0016043	GO:GO:0016049	GO:GO:0016787	GO:GO:0019538	GO:GO:0040007
InterPro:IPR011989	EnsemblPlantsGene:Os07g0520400	EnsemblPlants:Os07t0520400-01	PANTHER:PTHR31355	PANTHER:PTHR31355:SF7	UniProt:Q8H513
SUPFAM:SSF48371	InterPro:TORTIFOLIA1/SPIRAL2-like	UniParc:UPI00000AD61C	RefSeq:XP_015647460.1	SEG:seg	:

Description

Similar to Potyviral helper component protease-interacting protein 2. (Os07t0520400-01)

Coordinates

chr7:-:20087170..20093360

Molecular Weight (calculated)

95464.8 Da

IEP (calculated)

5.229

GRAVY (calculated)

-0.486

Length

895 amino acids

Sequence
(BLAST)

001: MATAVSKSAA KPHPRSPTTA QPPNNGSAAG AAAGGGGGGV GMGPAGATPS KNAAMAELKS RVLGALAKLS DRDTHHIAVE DLDRIIRSLP SPDAVPMLVH
101: ALASDSPGLA SPARRESLRL LATLCAAHPD AAAPYLQKVM AHLARRLKDT NSDSSVRDAC RDAAGQLSEV YLRPLAASAA AEAGNATVTL FVKPLFEAMG
201: EQSKAVQGGA AACLAKTVEG AGPGPGVVGM FGKIGPRVCK LLGGQGVQAK GALLTIIGSL SQVGAISPQN MPQTLQSIRD CLENSDWATR KAAADTLCVL
301: ATYSGRLIGD GTAPTIAALE ACRFDKVKPV RDSMADAVQL WKKMAGDDSN DGKNKESADN EGKMDSPNNN DKVKGSSMAE KAAVLLKKRP TLTDRELNPE
401: FFQKLETRIT DELAVEVVVP RKTLQSHLQS EEEPEDADGD PVGPANSNGS ADDEANLTQL RSSSNFQNIR DRWAGQRGSR NKDAKVRASD VEDRNESSAK
501: DSASAAMNVP GEGPSLNNKT NWLAIQRQLS HLDRQQTSLM NMLQDFMGGS HDSMVTLENR VRGLERVVEE MARDISLSSG RRGGGPMLGF DSSPGRSSMK
601: YNGFHEYSNS KFGRDRDGRV GFAERYFSGD GMSSGVRSSE PWDSYAYSGS RSGMNARRGL DSVSSDNRVP RNERSNDQAG PRRGWDKGQG PFRFGEGPSA
701: RSAWRASKDE ATLEAIRVAG EDNGTSRAAA RVAIRELDGE TLNDDNQGDE RGPIWESWTR AMDAIHVGDM DSAYAEVLST GDAELLVKLM EQTGPVVDQL
801: SNEVANEVLH AVGQFLVEES FYDIALSWLQ QLTDLVMDNG SGYLGIPLDA KNDLLLGLHE ATAIELPDDW EGATPVQIMK QLASSWRIDL QQLIS

Best Arabidopsis Sequence Match ( AT4G27060.1 )
(BLAST)

001: MSTPTTSGSA AKPTRPARSS SLATRSCSNS GSLTSFQAMV ELKQKILTSI SKLADRDTYQ IAVEDLEKTI QSLTPETLPM FLNCLYDSCS DPKPAVKKEC
101: LHLLSYVCSL HCDSTAAHLT KIIAQIVKRL KDSDSGVRDA CRDTIGALSG IYLKGKEEGT NTGSASLAVG LFVKPLFEAM GEQNKVVQSG ASMCMARMVE
201: SAASPPVTSF QKLCPRICKL LSNSSFLAKA SLLPVVSSLS QVGAIAPQSL ESLLESIHDC LGSTDWVTRK AAAETLTALA SHSSGLIKEK TDSTITVLET
301: CRFDKIKPVR ESVTEALQLW KKISGKYVDG ASDDSKLSAS EQLGSEKNGE KRSNLADLMK KEASDGSTLS PDSASKGKGC FPEKAVGLLK KKAPVLSDKD
401: FNPEFFQRLE RRQSVEVVVP RRCKNNDEEE SGLDDLNAMG SSNRLKNTQA DDKQVKGRFD GNGSQARTSG DDKAGVVNGK ETPGHHAPVS NTDNQSEGSF
501: TSNRGNWSAI QRQLLQLERQ QTNLMNMLQE FIGGSHDSMV TLEGRVRGLE RIVEDMARDL SISSGRRANL TAGFGKYNSF ANYPTGKYNG RAPGERGSQT
601: DGAMRGRMWN SDMADDWFIP PHAASRNGQA GPRRSPRSEQ YENEHMGNGR RGWDNKASGT IRFGEGPSAR SVWQASKDEA TLEAIRVAGE DGAVPRPTRV
701: AVAPEAEAMG DDDNEGQERD PIWVSWSNAM HSLRVGDIDA AYAEVLCAGD QHLVIKLMDK TGPSLDQMSN EIANEALNFI SQFLLDHSLY DICLSWSQQL
801: LELVLQDGAD TFGVPMELKT EILYNLQDAC STMDPPEDWE GPAPEQLVVQ LASVWEIDLQ QFDK

Arabidopsis Description

TOR1Microtubule-associated protein TORTIFOLIA1 [Source:UniProtKB/Swiss-Prot;Acc:Q9T041]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.