Factsheet for GSMUA_Achr9P02790_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P15330_001
GSMUA_Achr6P15310_001
GSMUA_Achr6P23530_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27060.1	GSMUA_Achr10P...	AT5G02530.1	21798944
AT4G27060.1	GSMUA_Achr6P15310_001	AT5G02530.1	21798944
AT4G27060.1	GSMUA_Achr6P23530_001	AT5G02530.1	21798944
AT4G27060.1	GSMUA_AchrUn_...	AT5G02530.1	21798944
AT4G27060.1	GSMUA_Achr11P...	AT5G22890.1	21798944
AT4G27060.1	GSMUA_Achr1P15330_001	AT5G22890.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P11640_001	Banana	cytosol	67.16	58.42
HORVU2Hr1G046160.2	Barley	cytosol, plastid	43.79	47.06
VIT_19s0090g00020.t01	Wine grape	plastid	55.27	44.14
Os07t0520400-01	Rice	cytosol, mitochondrion, nucleus, plastid	51.67	43.24
Solyc10g006350.2.1	Tomato	plastid	49.8	43.17
PGSC0003DMT400037390	Potato	plastid	49.53	43.04
TraesCS2B01G246900.8	Wheat	plastid	50.73	43.04
TraesCS2D01G226900.1	Wheat	plastid	50.73	42.94
TraesCS2A01G221200.6	Wheat	plastid	50.6	42.82
EER99458	Sorghum	plastid	52.2	42.41
Bra030470.1-P	Field mustard	cytosol	43.26	41.91
KRH46114	Soybean	plastid	51.8	41.9
CDY29609	Canola	cytosol	43.12	41.79
KRG98830	Soybean	plastid	51.27	41.6
Zm00001d021641_P002	Maize	plastid	51.0	41.21
AT1G50890.1	Thale cress	plastid	43.66	39.83
Zm00001d006504_P005	Maize	plastid	48.73	39.29
AT4G27060.1	Thale cress	plastid	45.26	39.24
CDY29271	Canola	plastid	44.59	38.79
CDY07335	Canola	cytosol	42.32	38.24
CDX89282	Canola	plastid	44.99	35.44
Bra026382.1-P	Field mustard	plastid	45.66	34.69
GSMUA_Achr9P23120_001	Banana	mitochondrion	23.63	21.1
GSMUA_Achr4P12500_001	Banana	mitochondrion	15.09	19.12
GSMUA_Achr7P02250_001	Banana	cytosol	13.48	18.2

Protein Annotations

Gene3D:1.25.10.10	MapMan:20.1.5.3	InterPro:ARM-like	InterPro:ARM-type_fold	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856
GO:GO:0005874	GO:GO:0008017	EnsemblPlantsGene:GSMUA_Achr9G02790_001	EnsemblPlants:GSMUA_Achr9P02790_001	EnsemblPlants:GSMUA_Achr9T02790_001	InterPro:IPR011989
UniProt:M0TWY8	PANTHER:PTHR31355	PANTHER:PTHR31355:SF7	SUPFAM:SSF48371	InterPro:TORTIFOLIA1/SPIRAL2-like	UniParc:UPI000295EEAF
SEG:seg	:	:	:	:	:

Description

Putative Microtubule-associated protein TORTIFOLIA1 [Source:GMGC_GENE;Acc:GSMUA_Achr9G02790_001]

Coordinates

chr9:+:1973178..1979202

Molecular Weight (calculated)

81489.2 Da

IEP (calculated)

5.329

GRAVY (calculated)

-0.400

Length

749 amino acids

Sequence
(BLAST)

001: MATSTSKPSS RLSKPSSSSS KSQSCSSSSS GLSSHVAMVE LKSRILAALA KLSDRDTHQI AVDDLEKIIR TLPAEGVPVL LNALDSAGGI GGSSSMVALF
101: VKPLFDAMGE QNKAVQGGAA MCLARVVECA GANDDGGEGE EGRVTASGTM LQRLCPRICK LLGGQSFLAK GALLSVVSSL AQVGAIHLQS MQQLLQIVRE
201: CLESSEWATR KAAADTLCVL ASHSSHLLGD GAAATITALD ACRFDKVKPV RDSMMEALQL WKKIKGQGED SRNSDLTDSE EKATHKRSNS NKRSETLKNS
301: SAGSSPSEND SVSRGKGTNM PEKAVILLKK KAPSLTDKEL NPDFFQKLEK KSSDDLPVEV VLPRNCLQSS HSQCEEGPEA IYSDSTETPK HNSDYFPRGR
401: WIEQRGIRAK ESKAEDFDGS FMSNKANWSA IQRQLAQLER QQISLMNMLQ DFMGGSHDSM VTLENRVRGL ERVVDEMARD LAIKPGRRVR RRGSPWRSES
501: ETWDYHGASR NGVVNSRRGF NAVPVDGRVP RSEHDADQVG GRWAWDKGPG PFRLGEGPSA RSVWQASKDE ATLEAIRVAG EDNITSITAA RVAVPELDAE
601: GIADDNLGLD KGPLWASWTR AMDSLYVGDV DSAYAEILST GDDLLLVKLM DKSGPVFDQL SNEIASEVFR AIGQFVLEES LFDIALSWLH QLSDLVVENG
701: SEFLSIPLEW KREMLLNLRE ASVSEPPEYW EGTPPDQLMM HLAAAWGLN

Best Arabidopsis Sequence Match ( AT4G27060.1 )
(BLAST)

001: MSTPTTSGSA AKPTRPARSS SLATRSCSNS GSLTSFQAMV ELKQKILTSI SKLADRDTYQ IAVEDLEKTI QSLTPETLPM FLNCLYDSCS DPKPAVKKEC
101: LHLLSYVCSL HCDSTAAHLT KIIAQIVKRL KDSDSGVRDA CRDTIGALSG IYLKGKEEGT NTGSASLAVG LFVKPLFEAM GEQNKVVQSG ASMCMARMVE
201: SAASPPVTSF QKLCPRICKL LSNSSFLAKA SLLPVVSSLS QVGAIAPQSL ESLLESIHDC LGSTDWVTRK AAAETLTALA SHSSGLIKEK TDSTITVLET
301: CRFDKIKPVR ESVTEALQLW KKISGKYVDG ASDDSKLSAS EQLGSEKNGE KRSNLADLMK KEASDGSTLS PDSASKGKGC FPEKAVGLLK KKAPVLSDKD
401: FNPEFFQRLE RRQSVEVVVP RRCKNNDEEE SGLDDLNAMG SSNRLKNTQA DDKQVKGRFD GNGSQARTSG DDKAGVVNGK ETPGHHAPVS NTDNQSEGSF
501: TSNRGNWSAI QRQLLQLERQ QTNLMNMLQE FIGGSHDSMV TLEGRVRGLE RIVEDMARDL SISSGRRANL TAGFGKYNSF ANYPTGKYNG RAPGERGSQT
601: DGAMRGRMWN SDMADDWFIP PHAASRNGQA GPRRSPRSEQ YENEHMGNGR RGWDNKASGT IRFGEGPSAR SVWQASKDEA TLEAIRVAGE DGAVPRPTRV
701: AVAPEAEAMG DDDNEGQERD PIWVSWSNAM HSLRVGDIDA AYAEVLCAGD QHLVIKLMDK TGPSLDQMSN EIANEALNFI SQFLLDHSLY DICLSWSQQL
801: LELVLQDGAD TFGVPMELKT EILYNLQDAC STMDPPEDWE GPAPEQLVVQ LASVWEIDLQ QFDK

Arabidopsis Description

TOR1Microtubule-associated protein TORTIFOLIA1 [Source:UniProtKB/Swiss-Prot;Acc:Q9T041]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.