CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74505
CDX80828
CDX98183
CDY09178
CDY09179
CDY10442
CDY26965
CDY26966
CDY31715
CDY40364
CDY55544
CDY69109

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27060.1	CDX80828	AT5G02530.1	21798944
AT4G27060.1	CDY10442	AT5G02530.1	21798944
AT4G27060.1	CDY40364	AT5G02530.1	21798944
AT4G27060.1	CDY55544	AT5G02530.1	21798944
AT4G27060.1	CDX74505	AT5G22890.1	21798944
AT4G27060.1	CDX98183	AT5G22890.1	21798944
AT4G27060.1	CDY09178	AT5G22890.1	21798944
AT4G27060.1	CDY09179	AT5G22890.1	21798944
AT4G27060.1	CDY26965	AT5G22890.1	21798944
AT4G27060.1	CDY26966	AT5G22890.1	21798944
AT4G27060.1	CDY31715	AT5G22890.1	21798944
AT4G27060.1	CDY69109	AT5G22890.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89282	Canola	plastid	93.38	84.54
AT4G27060.1	Thale cress	plastid	77.58	77.31
CDY29609	Canola	cytosol	47.5	52.91
KRG98830	Soybean	plastid	52.26	48.75
KRH46114	Soybean	plastid	52.26	48.6
CDY07335	Canola	cytosol	46.23	48.01
Solyc10g006350.2.1	Tomato	plastid	47.04	46.88
PGSC0003DMT400037390	Potato	plastid	46.81	46.75
VIT_19s0090g00020.t01	Wine grape	plastid	50.87	46.7
GSMUA_Achr9P02790_001	Banana	plastid	38.79	44.59
GSMUA_Achr9P11640_001	Banana	cytosol	43.32	43.32
HORVU2Hr1G046160.2	Barley	cytosol, plastid	32.29	39.89
TraesCS2D01G226900.1	Wheat	plastid	40.77	39.66
TraesCS2A01G221200.6	Wheat	plastid	40.65	39.55
TraesCS2B01G246900.8	Wheat	plastid	39.95	38.96
Os07t0520400-01	Rice	cytosol, mitochondrion, nucleus, plastid	40.07	38.55
EER99458	Sorghum	plastid	41.0	38.29
Zm00001d021641_P002	Maize	plastid	39.37	36.57
Zm00001d006504_P005	Maize	plastid	36.93	34.23
CDY33611	Canola	cytosol, nucleus, plastid	15.33	28.88
CDY24496	Canola	plastid	15.21	28.23
CDY16768	Canola	cytosol	16.03	25.09
CDY46411	Canola	plastid	17.54	24.92
CDX78782	Canola	nucleus	23.69	24.37
CDY16232	Canola	plastid	17.54	23.97
CDY62371	Canola	plastid	14.4	23.94
CDY00306	Canola	cytosol	16.03	23.75
CDY38410	Canola	nucleus	21.37	23.44
CDY56641	Canola	cytosol	15.68	23.4
CDX68449	Canola	cytosol	1.97	22.97
CDY14680	Canola	cytosol, plastid	18.58	22.6
CDX87253	Canola	cytosol	15.56	22.6

Protein Annotations

Gene3D:1.25.10.10	MapMan:20.1.5.3	UniProt:A0A078GUP3	InterPro:ARM-like	InterPro:ARM-type_fold	EnsemblPlants:CDY29271
ProteinID:CDY29271	ProteinID:CDY29271.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005874	GO:GO:0008017
EnsemblPlantsGene:GSBRNA2T00042210001	InterPro:IPR011989	PANTHER:PTHR31355	PANTHER:PTHR31355:SF7	SUPFAM:SSF48371	InterPro:TORTIFOLIA1/SPIRAL2-like
UniParc:UPI0004EF11B2	SEG:seg	:	:	:	:

Description

BnaC01g19230DBnaC01g19230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GUP3]

Coordinates

chrLK032234:-:141044..144513

Molecular Weight (calculated)

93859.3 Da

IEP (calculated)

5.704

GRAVY (calculated)

-0.517

Length

861 amino acids

Sequence
(BLAST)

001: MSTPSSSASA AKPTRPARSS NATARSSSNS NSNSSSLTSF QAMVEQKQKI LTSISKLADR DTYQIAVEDL EKTIQSLTPE TLPMFLNCLY DSCSDPKPAV
101: KKECLHLLSY VCSLHSDSTA AHLTRIIAQI VKRLKDSDSG VRDACRDTIG ALSGIYLKGR EEGSNTLAVG LFVKPLFEAM GEQNKVVQSG AAMCMARMVE
201: SAATPPVASF QKLCPRICKL LSNSSFLAKA SLLPVVSSLS QVGAIAPQSL ESLLESIHDC LGSTDWVTRK AAAETLTSLA SHSTSLLKDR TDSTLAALET
301: CRFDKIKPVR ETVTEALQLW KKISGKCKNG DKRSNLSDLM KKEGSDGSIL SLDSASKAKG GLPEKAAVML KKKAPALSDK DFNPEFFQRL ERRQSVEVVV
401: PRRCKNEDEE ELGPDDLNAM GSSNRFKNIQ SNDHGFPDSK FHNLESGSDK LVKGRSDGNI SQAGTSADDK AGGVNGKQTA GNHAAIIDTD NHSDGSFTSN
501: RGNWSAIQRQ LLQLERQQTN LMNMLQEFIG GSHDSMVTLE GRVRGLERIV EDMARDLSIS SGRRGNQTAG FGKYNSFANY STGKYNGRGP GDRGSQPDGA
601: MRGRMWGSDM PDDWFMHQHG ASRNGQSGPR RSPRSDQYQN EHMGNGRRGW DNKAAGTIRY GEGPSARSVW QASKDEATLE AIRVAGEDGA VTRPTRVAAV
701: PEAEAMGDEE SEGQERDPIW SSWSNAMHSL RVGDIDSAYA EVLCAGDQHL IIKLMDKTGP SLDQMSNEIA NEALNFIAQF LLDHNLYDIC LSWIQQLLEL
801: VLQDGADTFG VPMELKSDIL FNLQDACSTM DPPEDWEGPA PEELVMQLAS VWEIDLQQFD K

Best Arabidopsis Sequence Match ( AT4G27060.1 )
(BLAST)

001: MSTPTTSGSA AKPTRPARSS SLATRSCSNS GSLTSFQAMV ELKQKILTSI SKLADRDTYQ IAVEDLEKTI QSLTPETLPM FLNCLYDSCS DPKPAVKKEC
101: LHLLSYVCSL HCDSTAAHLT KIIAQIVKRL KDSDSGVRDA CRDTIGALSG IYLKGKEEGT NTGSASLAVG LFVKPLFEAM GEQNKVVQSG ASMCMARMVE
201: SAASPPVTSF QKLCPRICKL LSNSSFLAKA SLLPVVSSLS QVGAIAPQSL ESLLESIHDC LGSTDWVTRK AAAETLTALA SHSSGLIKEK TDSTITVLET
301: CRFDKIKPVR ESVTEALQLW KKISGKYVDG ASDDSKLSAS EQLGSEKNGE KRSNLADLMK KEASDGSTLS PDSASKGKGC FPEKAVGLLK KKAPVLSDKD
401: FNPEFFQRLE RRQSVEVVVP RRCKNNDEEE SGLDDLNAMG SSNRLKNTQA DDKQVKGRFD GNGSQARTSG DDKAGVVNGK ETPGHHAPVS NTDNQSEGSF
501: TSNRGNWSAI QRQLLQLERQ QTNLMNMLQE FIGGSHDSMV TLEGRVRGLE RIVEDMARDL SISSGRRANL TAGFGKYNSF ANYPTGKYNG RAPGERGSQT
601: DGAMRGRMWN SDMADDWFIP PHAASRNGQA GPRRSPRSEQ YENEHMGNGR RGWDNKASGT IRFGEGPSAR SVWQASKDEA TLEAIRVAGE DGAVPRPTRV
701: AVAPEAEAMG DDDNEGQERD PIWVSWSNAM HSLRVGDIDA AYAEVLCAGD QHLVIKLMDK TGPSLDQMSN EIANEALNFI SQFLLDHSLY DICLSWSQQL
801: LELVLQDGAD TFGVPMELKT EILYNLQDAC STMDPPEDWE GPAPEQLVVQ LASVWEIDLQ QFDK

Arabidopsis Description

TOR1Microtubule-associated protein TORTIFOLIA1 [Source:UniProtKB/Swiss-Prot;Acc:Q9T041]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.