Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- plasma membrane 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P02790_001 | Banana | plastid | 58.42 | 67.16 |
| HORVU2Hr1G046160.2 | Barley | cytosol, plastid | 45.41 | 56.1 |
| TraesCS2B01G246900.8 | Wheat | plastid | 56.91 | 55.49 |
| Os07t0520400-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 57.49 | 55.31 |
| TraesCS2D01G226900.1 | Wheat | plastid | 56.21 | 54.69 |
| TraesCS2A01G221200.6 | Wheat | plastid | 56.21 | 54.69 |
| EER99458 | Sorghum | plastid | 56.68 | 52.93 |
| Zm00001d021641_P002 | Maize | plastid | 56.33 | 52.32 |
| VIT_19s0090g00020.t01 | Wine grape | plastid | 55.52 | 50.96 |
| PGSC0003DMT400037390 | Potato | plastid | 50.52 | 50.46 |
| Solyc10g006350.2.1 | Tomato | plastid | 50.64 | 50.46 |
| Zm00001d006504_P005 | Maize | plastid | 52.5 | 48.65 |
| KRG98830 | Soybean | plastid | 51.92 | 48.43 |
| KRH46114 | Soybean | plastid | 51.8 | 48.16 |
| CDY29609 | Canola | cytosol | 42.39 | 47.22 |
| Bra030470.1-P | Field mustard | cytosol | 41.93 | 46.7 |
| AT1G50890.1 | Thale cress | plastid | 42.39 | 44.46 |
| AT4G27060.1 | Thale cress | plastid | 44.13 | 43.98 |
| CDY29271 | Canola | plastid | 43.32 | 43.32 |
| CDY07335 | Canola | cytosol | 40.65 | 42.22 |
| CDX89282 | Canola | plastid | 42.86 | 38.8 |
| Bra026382.1-P | Field mustard | plastid | 43.44 | 37.93 |
| GSMUA_Achr9P23120_001 | Banana | mitochondrion | 23.93 | 24.55 |
| GSMUA_Achr7P02250_001 | Banana | cytosol | 15.21 | 23.6 |
| GSMUA_Achr4P12500_001 | Banana | mitochondrion | 15.45 | 22.5 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:20.1.5.3 | InterPro:ARM-like | InterPro:ARM-type_fold | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005856 |
| GO:GO:0005874 | GO:GO:0008017 | EnsemblPlantsGene:GSMUA_Achr9G11640_001 | EnsemblPlants:GSMUA_Achr9P11640_001 | EnsemblPlants:GSMUA_Achr9T11640_001 | InterPro:IPR011989 |
| UniProt:M0TZH3 | PANTHER:PTHR31355 | PANTHER:PTHR31355:SF7 | SUPFAM:SSF48371 | InterPro:TORTIFOLIA1/SPIRAL2-like | UniParc:UPI0002957B61 |
| SEG:seg | : | : | : | : | : |
Description
Putative Microtubule-associated protein TORTIFOLIA1 [Source:GMGC_GENE;Acc:GSMUA_Achr9G11640_001]
Coordinates
chr9:-:7557966..7563958
Molecular Weight (calculated)
93508.9 Da
IEP (calculated)
5.832
GRAVY (calculated)
-0.367
Length
861 amino acids
Sequence
(BLAST)
(BLAST)
001: MVELKSRVLS ALSKLSDRDT HQIAVDDLEK IIRTLPADGV PMLLHALIHD PSMPSPSPQD PPGSKNPSFL VGRRESLRLL ALLCASHTDA ASAHLPRIMA
101: HIVRRLKDPA SDSSVRDACR DAAGSLAALY LRPSLAAAAA HVDGAGSGGP SPVVALFVKP LFEAMGEQNK AVQGGAAMCL AKVVESAGGG GVGGGGQREE
201: GRVMTTGVVF QKLCPRICKL LGGQSFLAKG ALLSVISSLA QVGAISPQSM QQVLQTIREC LENSDWATRK AAADTLCVLA SHSSHVLGDG ATATITALEA
301: CRFDKVKPVR DSMMEALQLW KKIRGDGTLA DTKGISDLTD NEEKEDHKSD SVSKENGTNM LEKATVLLMK KAPSLTDKEL NPEFFQKLEK RSLDDFPVEV
401: VLPRRCLQSS HSQCEEGSEK VQDLDNFARD KWTEQRGSKA KESKAKVLNV EDTTEVCQKD PSPGRTNVPR SDANTDGPFM SNRANWTAIQ RQLAQLERQQ
501: ASLMNMLQDF IGGSHDSMVT LENRVRGLER VVEEMAHDLA MSSGRRVGNM MLGFDKSPGR SSSKYNGLHD YSSSKFGRVG ERFHLSDGLV TGVRGRDSPW
601: RSESEAWDSY GYVASRNGVM NTRRGFGAVP VDGRLHKTEH DTDQVSGRRA WNKGPGPFRL GEGPSARSVW QASKDEATLE AIRVAGEDNG TSRNAARVAV
701: PELDAEALTD DNPGPDKGPL WASWTRAMDS LHVGDIDSAY EEILSTGDDL LLVKLMDKSG PVFDQLSGEI ASEVLHAVGQ FILEQSLFDI ALNWLQQLSD
801: LVVENGADFL RVPLEWKREI LLNLHEASAL ELPEDWEGAA PDQLMMHLAS AWGLNLQQLV K
101: HIVRRLKDPA SDSSVRDACR DAAGSLAALY LRPSLAAAAA HVDGAGSGGP SPVVALFVKP LFEAMGEQNK AVQGGAAMCL AKVVESAGGG GVGGGGQREE
201: GRVMTTGVVF QKLCPRICKL LGGQSFLAKG ALLSVISSLA QVGAISPQSM QQVLQTIREC LENSDWATRK AAADTLCVLA SHSSHVLGDG ATATITALEA
301: CRFDKVKPVR DSMMEALQLW KKIRGDGTLA DTKGISDLTD NEEKEDHKSD SVSKENGTNM LEKATVLLMK KAPSLTDKEL NPEFFQKLEK RSLDDFPVEV
401: VLPRRCLQSS HSQCEEGSEK VQDLDNFARD KWTEQRGSKA KESKAKVLNV EDTTEVCQKD PSPGRTNVPR SDANTDGPFM SNRANWTAIQ RQLAQLERQQ
501: ASLMNMLQDF IGGSHDSMVT LENRVRGLER VVEEMAHDLA MSSGRRVGNM MLGFDKSPGR SSSKYNGLHD YSSSKFGRVG ERFHLSDGLV TGVRGRDSPW
601: RSESEAWDSY GYVASRNGVM NTRRGFGAVP VDGRLHKTEH DTDQVSGRRA WNKGPGPFRL GEGPSARSVW QASKDEATLE AIRVAGEDNG TSRNAARVAV
701: PELDAEALTD DNPGPDKGPL WASWTRAMDS LHVGDIDSAY EEILSTGDDL LLVKLMDKSG PVFDQLSGEI ASEVLHAVGQ FILEQSLFDI ALNWLQQLSD
801: LVVENGADFL RVPLEWKREI LLNLHEASAL ELPEDWEGAA PDQLMMHLAS AWGLNLQQLV K
001: MSTPTTSGSA AKPTRPARSS SLATRSCSNS GSLTSFQAMV ELKQKILTSI SKLADRDTYQ IAVEDLEKTI QSLTPETLPM FLNCLYDSCS DPKPAVKKEC
101: LHLLSYVCSL HCDSTAAHLT KIIAQIVKRL KDSDSGVRDA CRDTIGALSG IYLKGKEEGT NTGSASLAVG LFVKPLFEAM GEQNKVVQSG ASMCMARMVE
201: SAASPPVTSF QKLCPRICKL LSNSSFLAKA SLLPVVSSLS QVGAIAPQSL ESLLESIHDC LGSTDWVTRK AAAETLTALA SHSSGLIKEK TDSTITVLET
301: CRFDKIKPVR ESVTEALQLW KKISGKYVDG ASDDSKLSAS EQLGSEKNGE KRSNLADLMK KEASDGSTLS PDSASKGKGC FPEKAVGLLK KKAPVLSDKD
401: FNPEFFQRLE RRQSVEVVVP RRCKNNDEEE SGLDDLNAMG SSNRLKNTQA DDKQVKGRFD GNGSQARTSG DDKAGVVNGK ETPGHHAPVS NTDNQSEGSF
501: TSNRGNWSAI QRQLLQLERQ QTNLMNMLQE FIGGSHDSMV TLEGRVRGLE RIVEDMARDL SISSGRRANL TAGFGKYNSF ANYPTGKYNG RAPGERGSQT
601: DGAMRGRMWN SDMADDWFIP PHAASRNGQA GPRRSPRSEQ YENEHMGNGR RGWDNKASGT IRFGEGPSAR SVWQASKDEA TLEAIRVAGE DGAVPRPTRV
701: AVAPEAEAMG DDDNEGQERD PIWVSWSNAM HSLRVGDIDA AYAEVLCAGD QHLVIKLMDK TGPSLDQMSN EIANEALNFI SQFLLDHSLY DICLSWSQQL
801: LELVLQDGAD TFGVPMELKT EILYNLQDAC STMDPPEDWE GPAPEQLVVQ LASVWEIDLQ QFDK
101: LHLLSYVCSL HCDSTAAHLT KIIAQIVKRL KDSDSGVRDA CRDTIGALSG IYLKGKEEGT NTGSASLAVG LFVKPLFEAM GEQNKVVQSG ASMCMARMVE
201: SAASPPVTSF QKLCPRICKL LSNSSFLAKA SLLPVVSSLS QVGAIAPQSL ESLLESIHDC LGSTDWVTRK AAAETLTALA SHSSGLIKEK TDSTITVLET
301: CRFDKIKPVR ESVTEALQLW KKISGKYVDG ASDDSKLSAS EQLGSEKNGE KRSNLADLMK KEASDGSTLS PDSASKGKGC FPEKAVGLLK KKAPVLSDKD
401: FNPEFFQRLE RRQSVEVVVP RRCKNNDEEE SGLDDLNAMG SSNRLKNTQA DDKQVKGRFD GNGSQARTSG DDKAGVVNGK ETPGHHAPVS NTDNQSEGSF
501: TSNRGNWSAI QRQLLQLERQ QTNLMNMLQE FIGGSHDSMV TLEGRVRGLE RIVEDMARDL SISSGRRANL TAGFGKYNSF ANYPTGKYNG RAPGERGSQT
601: DGAMRGRMWN SDMADDWFIP PHAASRNGQA GPRRSPRSEQ YENEHMGNGR RGWDNKASGT IRFGEGPSAR SVWQASKDEA TLEAIRVAGE DGAVPRPTRV
701: AVAPEAEAMG DDDNEGQERD PIWVSWSNAM HSLRVGDIDA AYAEVLCAGD QHLVIKLMDK TGPSLDQMSN EIANEALNFI SQFLLDHSLY DICLSWSQQL
801: LELVLQDGAD TFGVPMELKT EILYNLQDAC STMDPPEDWE GPAPEQLVVQ LASVWEIDLQ QFDK
Arabidopsis Description
TOR1Microtubule-associated protein TORTIFOLIA1 [Source:UniProtKB/Swiss-Prot;Acc:Q9T041]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.