Factsheet for PGSC0003DMT400037390

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001105
PGSC0003DMT400049442
PGSC0003DMT400049444
PGSC0003DMT400085575

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27060.1	PGSC0003DMT400049442	AT5G02530.1	21798944
AT4G27060.1	PGSC0003DMT400049444	AT5G02530.1	21798944
AT4G27060.1	PGSC0003DMT400085575	AT5G02530.1	21798944
AT4G27060.1	PGSC0003DMT400001105	AT5G22890.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g006350.2.1	Tomato	plastid	92.46	92.25
VIT_19s0090g00020.t01	Wine grape	plastid	63.57	58.42
KRG98830	Soybean	plastid	59.98	56.01
KRH46114	Soybean	plastid	57.66	53.67
CDY29609	Canola	cytosol	45.71	50.97
Bra030470.1-P	Field mustard	cytosol	45.36	50.58
GSMUA_Achr9P11640_001	Banana	cytosol	50.46	50.52
AT4G27060.1	Thale cress	plastid	49.77	49.65
AT1G50890.1	Thale cress	plastid	47.22	49.57
GSMUA_Achr9P02790_001	Banana	plastid	43.04	49.53
HORVU2Hr1G046160.2	Barley	cytosol, plastid	38.17	47.2
TraesCS2A01G221200.6	Wheat	plastid	48.38	47.12
CDY29271	Canola	plastid	46.75	46.81
TraesCS2D01G226900.1	Wheat	plastid	48.03	46.78
TraesCS2B01G246900.8	Wheat	plastid	47.33	46.21
CDY07335	Canola	cytosol	44.2	45.96
Os07t0520400-01	Rice	cytosol, mitochondrion, nucleus, plastid	47.1	45.36
EER99458	Sorghum	plastid	46.64	43.6
Zm00001d021641_P002	Maize	plastid	45.82	42.61
CDX89282	Canola	plastid	46.64	42.27
Bra026382.1-P	Field mustard	plastid	47.45	41.48
Zm00001d006504_P005	Maize	plastid	43.27	40.15
PGSC0003DMT400058293	Potato	extracellular	18.21	24.45
PGSC0003DMT400063183	Potato	cytosol	17.4	24.15
PGSC0003DMT400035319	Potato	nucleus	20.42	22.17

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:102590437	MapMan:20.1.5.3	InterPro:ARM-like	InterPro:ARM-type_fold	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005856	GO:GO:0005874	GO:GO:0006508	GO:GO:0008017	GO:GO:0008150
GO:GO:0008152	GO:GO:0008233	GO:GO:0016787	GO:GO:0019538	InterPro:IPR011989	UniProt:M1B5B2
EnsemblPlantsGene:PGSC0003DMG400014424	PGSC:PGSC0003DMG400014424	EnsemblPlants:PGSC0003DMT400037390	PANTHER:PTHR31355	PANTHER:PTHR31355:SF7	SUPFAM:SSF48371
InterPro:TORTIFOLIA1/SPIRAL2-like	UniParc:UPI000295CE12	RefSeq:XP_006352502.1	SEG:seg	:	:

Description

Potyviral helper component protease-interacting protein 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400014424]

Coordinates

chr10:-:1271738..1280155

Molecular Weight (calculated)

93394.9 Da

IEP (calculated)

5.069

GRAVY (calculated)

-0.412

Length

862 amino acids

Sequence
(BLAST)

001: MASLVSKSSK PSKPTPQSSS APPSRSSSSS SSLSTHFAMI ELKQRILTSI SKLSDRDTHQ IAVEDLEKII QTLSNDGVSM LLNCLYDASN DPKPAVKKET
101: LRLLPTVCAS HGDSAATHLT KIIGNIVKRL KDSDSGVRDA CRDAIGSLSS LYLKGEAESG GIGSVVALFV KPLFEAMNEN SKTVQSGAAL CMAKVVECAS
201: DPPVLSFQKL CPRICKYLNN PHFVAKASLL PVVSSLSQVG AIAPQNLEPL LQTIHECLSN TDWATRKAAA DTLSALALNS SNLVAGGATS TLTVLEASRF
301: DKIKPVRDSM LEALQHWKKI AGKEDGATDD QKTSCIDGES SESAGSSEKD LRNAVGILKK RGPALSDRKL NPEFFQKLEE RSSNDLPVEV VVPRQCLNAS
401: NTPTEVESVS EKAETGQRIM RKSQIDARYS NTESQTSGVS GRAHDTVDEG DLNQREQSSY RTGFAKNAGP PEGFMANKGN WLAIQRQLLL LERQQAHLTN
501: MLQDFMGGSH GSMVALENRV RGLERVVEDM ARDLSLSAGR RGGAFTARFD ESLNRPLGKY NSFHDYSSTK LGRGSEGSIP FGERFVPSDG NSLGMRGRSP
601: PRRSDNPDAW DFHSYGKYGQ SGSRRGIGGG PMDARPSKLE NEIDQVGTRR GWAKGAGPVR FGEGPSARSI WQASKDEATL EAIRVAGDDN GTARGTRVAI
701: PELEAEALTD DSNMQERDPV WTSWTNAMDA FSVGDMDSAF SEVLSTGDDF LLVKLMDRSG PVIDQLSNEV ASEALHAVAQ FLLEPNLTDI CLSWVQQLLE
801: IVIENGPEVV DLPMEVKKEL LLNLNEISSS VDLPEDWEGA TPEQLLLQLA SAWDIDLQEL EK

Best Arabidopsis Sequence Match ( AT4G27060.1 )
(BLAST)

001: MSTPTTSGSA AKPTRPARSS SLATRSCSNS GSLTSFQAMV ELKQKILTSI SKLADRDTYQ IAVEDLEKTI QSLTPETLPM FLNCLYDSCS DPKPAVKKEC
101: LHLLSYVCSL HCDSTAAHLT KIIAQIVKRL KDSDSGVRDA CRDTIGALSG IYLKGKEEGT NTGSASLAVG LFVKPLFEAM GEQNKVVQSG ASMCMARMVE
201: SAASPPVTSF QKLCPRICKL LSNSSFLAKA SLLPVVSSLS QVGAIAPQSL ESLLESIHDC LGSTDWVTRK AAAETLTALA SHSSGLIKEK TDSTITVLET
301: CRFDKIKPVR ESVTEALQLW KKISGKYVDG ASDDSKLSAS EQLGSEKNGE KRSNLADLMK KEASDGSTLS PDSASKGKGC FPEKAVGLLK KKAPVLSDKD
401: FNPEFFQRLE RRQSVEVVVP RRCKNNDEEE SGLDDLNAMG SSNRLKNTQA DDKQVKGRFD GNGSQARTSG DDKAGVVNGK ETPGHHAPVS NTDNQSEGSF
501: TSNRGNWSAI QRQLLQLERQ QTNLMNMLQE FIGGSHDSMV TLEGRVRGLE RIVEDMARDL SISSGRRANL TAGFGKYNSF ANYPTGKYNG RAPGERGSQT
601: DGAMRGRMWN SDMADDWFIP PHAASRNGQA GPRRSPRSEQ YENEHMGNGR RGWDNKASGT IRFGEGPSAR SVWQASKDEA TLEAIRVAGE DGAVPRPTRV
701: AVAPEAEAMG DDDNEGQERD PIWVSWSNAM HSLRVGDIDA AYAEVLCAGD QHLVIKLMDK TGPSLDQMSN EIANEALNFI SQFLLDHSLY DICLSWSQQL
801: LELVLQDGAD TFGVPMELKT EILYNLQDAC STMDPPEDWE GPAPEQLVVQ LASVWEIDLQ QFDK

Arabidopsis Description

TOR1Microtubule-associated protein TORTIFOLIA1 [Source:UniProtKB/Swiss-Prot;Acc:Q9T041]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.