CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74505
CDX80828
CDX98183
CDY09178
CDY09179
CDY10442
CDY26965
CDY26966
CDY31715
CDY40364
CDY55544
CDY69109

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27060.1	CDX80828	AT5G02530.1	21798944
AT4G27060.1	CDY10442	AT5G02530.1	21798944
AT4G27060.1	CDY40364	AT5G02530.1	21798944
AT4G27060.1	CDY55544	AT5G02530.1	21798944
AT4G27060.1	CDX74505	AT5G22890.1	21798944
AT4G27060.1	CDX98183	AT5G22890.1	21798944
AT4G27060.1	CDY09178	AT5G22890.1	21798944
AT4G27060.1	CDY09179	AT5G22890.1	21798944
AT4G27060.1	CDY26965	AT5G22890.1	21798944
AT4G27060.1	CDY26966	AT5G22890.1	21798944
AT4G27060.1	CDY31715	AT5G22890.1	21798944
AT4G27060.1	CDY69109	AT5G22890.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29271	Canola	plastid	84.54	93.38
Bra026382.1-P	Field mustard	plastid	83.7	80.73
AT4G27060.1	Thale cress	plastid	70.03	77.08
CDY29609	Canola	cytosol	42.8	52.65
KRG98830	Soybean	plastid	47.53	48.97
KRH46114	Soybean	plastid	47.42	48.7
CDY07335	Canola	cytosol	41.54	47.65
VIT_19s0090g00020.t01	Wine grape	plastid	46.06	46.7
PGSC0003DMT400037390	Potato	plastid	42.27	46.64
Solyc10g006350.2.1	Tomato	plastid	42.27	46.53
GSMUA_Achr9P02790_001	Banana	plastid	35.44	44.99
GSMUA_Achr9P11640_001	Banana	cytosol	38.8	42.86
HORVU2Hr1G046160.2	Barley	cytosol, plastid	28.92	39.45
TraesCS2D01G226900.1	Wheat	plastid	36.49	39.21
TraesCS2A01G221200.6	Wheat	plastid	36.38	39.1
TraesCS2B01G246900.8	Wheat	plastid	35.65	38.39
Os07t0520400-01	Rice	cytosol, mitochondrion, nucleus, plastid	36.07	38.32
EER99458	Sorghum	plastid	36.91	38.07
Zm00001d021641_P002	Maize	plastid	35.54	36.46
Zm00001d006504_P005	Maize	plastid	33.44	34.23
CDY33611	Canola	cytosol, nucleus, plastid	14.09	29.32
CDY24496	Canola	plastid	13.88	28.45
CDY16768	Canola	cytosol	14.62	25.27
CDY46411	Canola	plastid	15.88	24.92
CDY62371	Canola	plastid	13.25	24.32
CDY16232	Canola	plastid	16.09	24.29
CDY00306	Canola	cytosol	14.83	24.27
CDX78782	Canola	nucleus	21.35	24.25
CDY56641	Canola	cytosol	14.62	24.09
CDY38410	Canola	nucleus	19.14	23.18
CDX68449	Canola	cytosol	1.79	22.97
CDX87253	Canola	cytosol	14.2	22.77
CDY14680	Canola	cytosol, plastid	16.72	22.46

Protein Annotations

Gene3D:1.25.10.10	MapMan:20.1.5.3	InterPro:ARM-like	InterPro:ARM-type_fold	EnsemblPlants:CDX89282	ProteinID:CDX89282
ProteinID:CDX89282.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005874	GO:GO:0008017	EnsemblPlantsGene:GSBRNA2T00149496001
InterPro:IPR011989	PANTHER:PTHR31355	PANTHER:PTHR31355:SF7	SUPFAM:SSF48371	InterPro:TORTIFOLIA1/SPIRAL2-like	UniParc:UPI0004EDF09F
SEG:seg	:	:	:	:	:

Description

BnaA01g16110D

Coordinates

chrLK031858:+:701796..706843

Molecular Weight (calculated)

104228.0 Da

IEP (calculated)

6.167

GRAVY (calculated)

-0.411

Length

951 amino acids

Sequence
(BLAST)

001: MSTPSSSASA AKPTRPARSS NATARSSSSN SNSNSHSLTS FQAMVEQKQK ILTSISKLAD RDTYQIAVED LEKTIQSLTP ETLPMFLNCL YDSCSDPKPA
101: VKKECLHLLS YVCSLHSDST AAHLTRIIAQ IVKRLKDPDS GVRDACRDTI GALSGIYLKG REEGSNTLAV GLFVKPLFEA MGEQNKVVQS GAAMCMARMV
201: ESAATPPVAS FQKLCPRICK LLSNSSFLAK ASLLPVVSSL SQVCSEPLNL ICDNGLYIFF EIMYVCMYIH SITSPYCLRV KSYPTFVYPR LLFSFRLTRL
301: MKFGGGFKKL SVSLLLIVRC YSNRAITFVQ VGAIAPQSLE SLLESIHDCL GSTDWVTRKA AAETLTSLAS HSSSLLKDRT DSTLAALETC RFDKIKPVRE
401: TVTEALQLWK KISGKCLDGA PDESNLSDLM KKEASDGSIL SPDSASKAKG GLPEKAAVML KKKAPALSDK DFNPEFFQRL ERRQSVEVVV PRRCKNEDGE
501: ELGPDDLNAM GSSNRFKNIQ SNDHGFPDSK FHNLESGSDK LVKGRSDGNI SQAGTSADDK AGGVNGKQTA GNHAAISDTD NHSDGSFTSN RGNWSAIQRQ
601: LLQLERQQTN LMNMLQEFIG GSHDSMVTLE GRVRGLERIV EDMARDLSIS SGRRGNPTAG FGKYNSFANY SSGKYNGRGP GDRGSQPDGA MRGRMWSSDM
701: QDDWFMHQHG ASRNGQTGPR RSPRSEQYQN EHMGNGRRGW DNKAAGTIRY GEGPSARSVW QASKDEATLE AIRVAGEDGA VTRPTRVAAV PEAEAMGDEE
801: SEGQERDPIW SSWSNAMHSL RVGDVDSAYA EVLCAGDQHL IIKLMDKTGP SLDQMSNEIA NEALNFIAQF LLDHNLYDIC LSWIQQLLEL VLQDGADTFG
901: VPMELKSDIL FNLQDACSTM DPPEEWEGPA PEELVMQLAS VWEIDLQQFD K

Best Arabidopsis Sequence Match ( AT4G27060.1 )
(BLAST)

001: MSTPTTSGSA AKPTRPARSS SLATRSCSNS GSLTSFQAMV ELKQKILTSI SKLADRDTYQ IAVEDLEKTI QSLTPETLPM FLNCLYDSCS DPKPAVKKEC
101: LHLLSYVCSL HCDSTAAHLT KIIAQIVKRL KDSDSGVRDA CRDTIGALSG IYLKGKEEGT NTGSASLAVG LFVKPLFEAM GEQNKVVQSG ASMCMARMVE
201: SAASPPVTSF QKLCPRICKL LSNSSFLAKA SLLPVVSSLS QVGAIAPQSL ESLLESIHDC LGSTDWVTRK AAAETLTALA SHSSGLIKEK TDSTITVLET
301: CRFDKIKPVR ESVTEALQLW KKISGKYVDG ASDDSKLSAS EQLGSEKNGE KRSNLADLMK KEASDGSTLS PDSASKGKGC FPEKAVGLLK KKAPVLSDKD
401: FNPEFFQRLE RRQSVEVVVP RRCKNNDEEE SGLDDLNAMG SSNRLKNTQA DDKQVKGRFD GNGSQARTSG DDKAGVVNGK ETPGHHAPVS NTDNQSEGSF
501: TSNRGNWSAI QRQLLQLERQ QTNLMNMLQE FIGGSHDSMV TLEGRVRGLE RIVEDMARDL SISSGRRANL TAGFGKYNSF ANYPTGKYNG RAPGERGSQT
601: DGAMRGRMWN SDMADDWFIP PHAASRNGQA GPRRSPRSEQ YENEHMGNGR RGWDNKASGT IRFGEGPSAR SVWQASKDEA TLEAIRVAGE DGAVPRPTRV
701: AVAPEAEAMG DDDNEGQERD PIWVSWSNAM HSLRVGDIDA AYAEVLCAGD QHLVIKLMDK TGPSLDQMSN EIANEALNFI SQFLLDHSLY DICLSWSQQL
801: LELVLQDGAD TFGVPMELKT EILYNLQDAC STMDPPEDWE GPAPEQLVVQ LASVWEIDLQ QFDK

Arabidopsis Description

TOR1Microtubule-associated protein TORTIFOLIA1 [Source:UniProtKB/Swiss-Prot;Acc:Q9T041]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.