CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24496	Canola	plastid	88.18	86.85
AT1G59850.1	Thale cress	plastid	68.27	62.65
CDY46411	Canola	plastid	50.11	37.79
CDY62371	Canola	plastid	42.45	37.45
CDY16232	Canola	plastid	50.11	36.35
CDY14680	Canola	cytosol, plastid	50.11	32.34
VIT_01s0026g01020.t01	Wine grape	cytosol	45.3	32.09
CDY16768	Canola	cytosol	36.76	30.55
CDX68449	Canola	cytosol	4.81	29.73
KRH69431	Soybean	endoplasmic reticulum, nucleus	42.45	29.53
PGSC0003DMT400058293	Potato	extracellular	40.92	29.13
CDX87253	Canola	cytosol	37.2	28.67
KRH74717	Soybean	plastid	41.58	28.49
CDY56641	Canola	cytosol	35.67	28.25
CDY00306	Canola	cytosol	35.67	28.06
Solyc05g006550.2.1	Tomato	cytosol	39.61	27.26
TraesCS7A01G236800.1	Wheat	cytosol	34.79	25.36
KXG19701	Sorghum	cytosol	34.14	25.2
EES05553	Sorghum	cytosol	33.92	25.16
Zm00001d037271_P001	Maize	cytosol	33.7	25.08
Zm00001d017987_P003	Maize	cytosol, mitochondrion, nucleus, plastid	33.48	25.0
TraesCS6B01G341700.1	Wheat	mitochondrion	33.7	24.84
HORVU7Hr1G040280.1	Barley	peroxisome	33.7	24.84
TraesCS6D01G290800.1	Wheat	mitochondrion	33.7	24.8
Os02t0739900-01	Rice	cytosol, mitochondrion	32.6	24.35
Zm00001d044760_P001	Maize	cytosol	31.73	23.89
TraesCS6A01G311500.1	Wheat	cytosol	30.42	23.6
Os06t0244700-01	Rice	cytosol	27.13	23.48
GSMUA_Achr7P02250_001	Banana	cytosol	28.23	23.24
TraesCS7B01G103000.1	Wheat	plastid	35.23	22.8
Zm00001d016462_P001	Maize	cytosol	20.79	22.41
TraesCS7D01G199100.1	Wheat	plastid	34.35	22.24
Zm00001d017306_P002	Maize	cytosol	14.22	20.63
Zm00001d044701_P001	Maize	cytosol	20.13	18.89
HORVU6Hr1G076760.1	Barley	nucleus	24.29	18.02
CDY38410	Canola	nucleus	29.54	17.2
CDY29609	Canola	cytosol	27.57	16.3
CDX78782	Canola	nucleus	29.32	16.01
CDY07335	Canola	cytosol	28.01	15.44
CDY29271	Canola	plastid	28.88	15.33
CDX89282	Canola	plastid	29.32	14.09

Protein Annotations

Gene3D:1.25.10.10	MapMan:35.1	UniProt:A0A078H6X7	InterPro:ARM-like	InterPro:ARM-type_fold	EnsemblPlants:CDY33611
ProteinID:CDY33611	ProteinID:CDY33611.1	InterPro:Cohesin_HEAT	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005874
GO:GO:0008017	EnsemblPlantsGene:GSBRNA2T00054924001	InterPro:IPR011989	PFAM:PF12765	PANTHER:PTHR31355	PANTHER:PTHR31355:SF3
SUPFAM:SSF48371	InterPro:TORTIFOLIA1/SPIRAL2-like	UniParc:UPI0004EE068D	SEG:seg	:	:

Description

BnaC01g28420DBnaC01g28420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H6X7]

Coordinates

chrLK032318:-:122488..123948

Molecular Weight (calculated)

49830.3 Da

IEP (calculated)

8.016

GRAVY (calculated)

-0.335

Length

457 amino acids

Sequence
(BLAST)

001: MRSSPSVSPP RTVTDLKQRV IACLNRLSDR DTQSLAAAEL DSIALNLSPE AFSLFINCLQ TTDSSAKSPV RKHCVSLISL LSRSHGDSLA PHLPKMVSTI
101: LRRLRDPDSS VRAACATASV DMTTNITELP FSVLAGPMIE ALIHDCDANA QIGAAVCLAA AIDAADDPDV EQLQKALPKI GKLLKSEGFK AKPELLGAIG
201: SVIGAIGGRN SDKAVLDWLL PNVLEFLSSD DWHARKAAAE AVARVATAEE ELAPLYKKAC LALLESRRFD KVKLVRETMN HTLSLWKQLG DDSPDSSSLS
301: KSVSTGKGIN TLKSKENNPN LNDVEAAESK EKRPLGTRRV LFPAKPKVKE NRSNKSQVVA VVQSSDEEEE SSSSSQRKNA EEELSLIRNQ ITQIEKQQSS
401: LVDLFQRFME SSQNEMQSLG RRVRCLETSF SVLSTDLLVS RTITQNGTHK RNAHLQN

Best Arabidopsis Sequence Match ( AT1G59850.1 )
(BLAST)

001: MPSVQIRSSP SHSQPAMTVT DLKQRVIACL NRLSDRDTLA LAAAELDSIA LNLSPETFSL FINCLQSTDS SAKSPVRKHC VSLLSVLSRS HGDSLAPHLS
101: KMVSTVLRRL RDPDSSVRAA CVAASVDMTT NITGQPFSIL FGPMIETVIH DCDPNAQISA AMCLAAAVDA ADEPDVEQLQ KALPKIGKLL KSEGFKAKAE
201: LLGAIGTVIG AVGGRNSEKA VLDWLLPNVS EFLSSDDWRA RKAAAEAMAR VAMVEEELAP LYKKTCLGIL ESRRFDKVKL VRETMNRTLG LWKQLEGDST
301: EVSESSSSSK SASSGLSATS GKRSNTLKGK DRNLNTPLSS KSNDVEPLDR GDTPKDVEQE AVVSKEKRNR STLGAKRVLF PAKMHKVKEN GSNKSQVVQS
401: SDEESPKTDS GSSSSSQAKS NAEELSLIRH QITQIEKQQS SLLDLFQKFM ESSHNGMQSL ERRVRGLETS FSVISTDLLV SRSITQNGNH KRNACRQN

Arabidopsis Description

TOR1L5TORTIFOLIA1-like protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIE4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.