CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97189
KRH68916

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27210.1	KRG97189	AT3G61790.1	21798944
AT1G27210.1	KRH68916	AT3G61790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69431	Soybean	endoplasmic reticulum, nucleus	86.96	88.28
CDX68449	Canola	cytosol	6.0	54.05
VIT_01s0026g01020.t01	Wine grape	cytosol	46.33	47.91
CDY62371	Canola	plastid	35.53	45.75
KRH54469	Soybean	cytosol	42.58	45.59
AT1G59850.1	Thale cress	plastid	32.98	44.18
KRH63453	Soybean	cytosol	40.78	43.73
AT1G27210.1	Thale cress	plastid	40.63	43.36
Bra035420.1-P	Field mustard	cytosol, nucleus, plastid	29.84	43.36
KRH03379	Soybean	cytosol, mitochondrion	39.58	43.28
CDY16232	Canola	plastid	40.78	43.17
Bra016316.1-P	Field mustard	plastid	39.13	43.07
CDY24496	Canola	plastid	29.84	42.89
Bra024646.1-P	Field mustard	plastid	40.93	42.79
CDY46411	Canola	plastid	38.53	42.41
KRH57001	Soybean	cytosol	38.68	42.23
CDY33611	Canola	cytosol, nucleus, plastid	28.49	41.58
PGSC0003DMT400058293	Potato	extracellular	38.98	40.5
Solyc05g006550.2.1	Tomato	cytosol	38.53	38.7
CDY14680	Canola	cytosol, plastid	40.78	38.42
GSMUA_Achr7P02250_001	Banana	cytosol	28.64	34.41
Os02t0739900-01	Rice	cytosol, mitochondrion	31.18	33.99
EES05553	Sorghum	cytosol	31.33	33.93
Zm00001d017987_P003	Maize	cytosol, mitochondrion, nucleus, plastid	30.73	33.5
Zm00001d037271_P001	Maize	cytosol	30.73	33.39
Bra007853.1-P	Field mustard	nucleus	10.49	32.86
TraesCS6D01G290800.1	Wheat	mitochondrion	30.58	32.85
TraesCS6B01G341700.1	Wheat	mitochondrion	30.43	32.74
TraesCS7A01G236800.1	Wheat	cytosol	30.58	32.54
KXG19701	Sorghum	cytosol	29.98	32.31
TraesCS6A01G311500.1	Wheat	cytosol	28.49	32.26
Zm00001d044760_P001	Maize	cytosol	28.79	31.63
HORVU7Hr1G040280.1	Barley	peroxisome	28.94	31.13
Os06t0244700-01	Rice	cytosol	23.99	30.3
TraesCS7D01G199100.1	Wheat	plastid	30.28	28.61
TraesCS7B01G103000.1	Wheat	plastid	30.13	28.47
Zm00001d016462_P001	Maize	cytosol	16.94	26.65
HORVU6Hr1G076760.1	Barley	nucleus	23.84	25.81
Zm00001d044701_P001	Maize	cytosol	16.79	23.0
Zm00001d017306_P002	Maize	cytosol	10.49	22.22
KRH74132	Soybean	cytosol, endoplasmic reticulum, nucleus	21.59	17.89
KRG98830	Soybean	plastid	24.29	17.55
KRH46114	Soybean	plastid	24.14	17.39

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100781440	MapMan:35.1	EMBL:ACUP02000064	InterPro:ARM-like	InterPro:ARM-type_fold
ncoils:Coil	EnsemblPlantsGene:GLYMA_01G038400	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005874	GO:GO:0008017	InterPro:HEAT
InterPro:HEAT_type_2	UniProt:I1J5G7	InterPro:IPR011989	InterPro:IPR021133	EnsemblPlants:KRH74717	ProteinID:KRH74717
ProteinID:KRH74717.1	PFAM:PF02985	PFscan:PS50077	PANTHER:PTHR31355	PANTHER:PTHR31355:SF15	SUPFAM:SSF48371
InterPro:TORTIFOLIA1/SPIRAL2-like	UniParc:UPI0002955B47	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:4092064..4096596

Molecular Weight (calculated)

72990.3 Da

IEP (calculated)

8.292

GRAVY (calculated)

-0.430

Length

667 amino acids

Sequence
(BLAST)

001: MSSRRHSLSG PPPLSGTEST HNLRQRVITC LNKLSDRDTL AGAAAELESI ARTLNHDSFS SFLSCIHNTD SSSKSPVRKQ CVHLLNVLSR FHGEALSPFI
101: SKMLATVLRR LRDTDSAVRS ECVDAVASMS SRITRPPFSA AFLRPLMDAL AQEQEANAQI GAALCLAAAV EASPDPDAEA LRRSALPRLG KLVKSDACRA
201: RAALLVLIGS VVGAGGASSR GAVNWLVPCL VEFLGSEDWT VRKAAAEALA KVASVERDLA SQHKALCLDS LQNRRFDKIK VVRETMNRAL ETWKEVTEDA
301: PASQVKSECA SVGTDDGKSQ CVTKSSPNVG FKSSSKTVIA NRSPASVVSF MSSIKRESSL KSNERHLRMG TMHQQGQEKS SDEKLETPFL GSSHSNMSRE
401: DDIKRCNVEV SKPPPYQNQN GVNSRAEIKR VLFSKMSDEK MRRFSGSKSR VVPCIDDDDL DADVIVNNAN EVCESPQDVE EFALIREQLL QIENQQSNLL
501: DLLQRFIGSS QSGMNSLESR VHGLEMALDE ISHDLAVSGG RVSNIDATED TCCKLPGTDF LSSKFWKKTE GRYSTSRFSL GSIPSTDAVH IATNKDGKRE
601: ILTANNNRLQ HGKGGYFVNP LAEVQSDLKG HHTYKLSKNL FQDAVRRYDG IQPATESLRN QNIRSSV

Best Arabidopsis Sequence Match ( AT1G27210.1 )
(BLAST)

001: MSVHGRFPAS PPISLSPSSS STSPSSQSPS TPPDLKQRVI ACLNKLADRD TLALASAELD SIARNLTHDS FSPFLNCIHN TDSSVKSPVR KQCVALLSVL
101: SRYHGDSLTP HLAKMVSTVI RRLRDPDSSV RSACAVATAD MSAHVTRQPF ASVAKPLIET LIQEGDSNLQ IGAALCLAAS VDAATDPESE QLRKSLPKIG
201: KLLKSDGFKA KAALLSAVGS IITAGGAGTK PVLDWLVPVL IEFLSSEDWA ARKSAAEALG KVATAEDLAS QYKKTCTTAL ESRRFDKVKS VRETMNRALN
301: LWKEVSTDDE ASLSPSRSST DDGNIGCFSS VTRSSTIDVG LKSARPKKVT PIMKRSPSLP VNRSYAATRQ KENLPKRNQG NMTMLVEEAS SVDNKGPHFT
401: PVKKSSEETE EKANSGGPDI IKHTISEKSR EDSKVSSFGG LRSGSRVAPC SDDGDSVKNC KDDVEESKKD SEELSLIREQ LALIENQQSS LLDLLQKFMG
501: TSQSGIQSLE SRVSGLEMAL DEISCDLAVS NGRVPRNSSG CAGDSCSKLP GTEFLSPKFW RKTEERPRNR NTANEMAAYD QGMRESTDTN NGQRGGSVFQ
601: KRSRRDQFQD CMHTTLQKPT TRLST

Arabidopsis Description

TOR1L4TORTIFOLIA1-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZH1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.