CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 2
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57001	Soybean	cytosol	87.87	87.72
KRH63453	Soybean	cytosol	59.34	58.2
KRH54469	Soybean	cytosol	59.02	57.78
VIT_17s0000g07470.t01	Wine grape	cytosol	55.9	53.45
PGSC0003DMT400063183	Potato	cytosol	47.05	46.22
Solyc03g113680.2.1	Tomato	nucleus	46.89	45.69
Bra035889.1-P	Field mustard	cytosol	41.64	45.2
CDY56641	Canola	cytosol	41.97	44.37
CDY00306	Canola	cytosol	42.13	44.23
CDY16768	Canola	cytosol	39.51	43.82
Bra010100.1-P	Field mustard	cytosol	41.31	43.45
CDX87253	Canola	cytosol	39.84	40.98
AT5G62580.1	Thale cress	cytosol	40.98	40.65
KRH74717	Soybean	plastid	43.28	39.58
KRH69431	Soybean	endoplasmic reticulum, nucleus	42.62	39.57
Zm00001d017987_P003	Maize	cytosol, mitochondrion, nucleus, plastid	38.69	38.56
EES05553	Sorghum	cytosol	38.52	38.15
Os02t0739900-01	Rice	cytosol, mitochondrion	37.87	37.75
TraesCS6D01G290800.1	Wheat	mitochondrion	37.54	36.88
TraesCS6B01G341700.1	Wheat	mitochondrion	37.38	36.77
Os06t0244700-01	Rice	cytosol	31.8	36.74
TraesCS6A01G311500.1	Wheat	cytosol	35.25	36.5
KXG19701	Sorghum	cytosol	36.89	36.35
Zm00001d037271_P001	Maize	cytosol	36.56	36.32
Zm00001d044760_P001	Maize	cytosol	35.57	35.75
GSMUA_Achr7P02250_001	Banana	cytosol	32.3	35.5
HORVU7Hr1G040280.1	Barley	peroxisome	35.9	35.32
TraesCS7A01G236800.1	Wheat	cytosol	35.9	34.93
TraesCS7D01G199100.1	Wheat	plastid	36.23	31.3
TraesCS7B01G103000.1	Wheat	plastid	36.07	31.16
Zm00001d016462_P001	Maize	cytosol	20.66	29.72
HORVU6Hr1G076760.1	Barley	nucleus	29.02	28.73
Zm00001d044701_P001	Maize	cytosol	20.16	25.26
Zm00001d017306_P002	Maize	cytosol	12.79	24.76
KRH74132	Soybean	cytosol, endoplasmic reticulum, nucleus	24.92	18.88
KRG98830	Soybean	plastid	27.05	17.88
KRH46114	Soybean	plastid	25.9	17.06

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100796857	MapMan:35.1	EMBL:ACUP02010345	InterPro:ARM-like	InterPro:ARM-type_fold
ncoils:Coil	EnsemblPlantsGene:GLYMA_17G094100	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005874	GO:GO:0008017	InterPro:HEAT
InterPro:IPR011989	UniProt:K7MKS9	EnsemblPlants:KRH03379	ProteinID:KRH03379	ProteinID:KRH03379.1	ProteinID:KRH03380.1
ProteinID:KRH03381.1	PFAM:PF02985	PANTHER:PTHR31355	PANTHER:PTHR31355:SF8	SUPFAM:SSF48371	InterPro:TORTIFOLIA1/SPIRAL2-like
UniParc:UPI000233E820	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:7350712..7354261

Molecular Weight (calculated)

67081.8 Da

IEP (calculated)

9.468

GRAVY (calculated)

-0.462

Length

610 amino acids

Sequence
(BLAST)

001: MSSTPQSLKQ RVFRCLTKLS DRDTQSLAAA ELESIARNLD GATLPMFLSC MYSTDDSDKP PVRKQCVQLL GFLAETHGNM LAPYLPKILG SVVRRLRDAD
101: SSVRSACVNS IAALSRHVSK PPLNAFLKPL AEALFTEQDQ NAQASAAMCL AAAIDGAPDP DPARLAKLLP RFEKLLKRDG FKAKPALLTL VGSVVAAGGA
201: SGHVPLNSLV PCLVEALSSD DWATRKAAAE TLVVVADVER DFLSEFKAEC VRVFENRRFD KVKLVRDVMN QMLEAWKQIP DVSDEVSPPP KSQSSSKENA
301: SDGRYPQVSH NSCSPRSMMA NLRRKSTPFS RFSPADSSSA SNAKNSSASS SNKRRLFVSR KLNHMNWDAP IAMADQGDLQ ERDGIVLDRS KMDKSRVSKS
401: EMKRVLLTKS SEDKMQKYGG SKAGSRVVPY HEDESQDSVP VSIVSKDLQR NDKESEDLSL IRDQLHQIEK QQSSLLDLLQ KFMGSSQNGM RSLETRVHGL
501: ELALDEISYD LAISSGRMTK SDAQGNACCM LPGAEFLSSK FRRKTHGRDS IVRFSRSGGT PSLAAMNYPP NRNAETKLTN HRFRPDGGFI TNPLAEIHTN
601: SRNFATLEIA

Best Arabidopsis Sequence Match ( AT1G27210.1 )
(BLAST)

001: MSVHGRFPAS PPISLSPSSS STSPSSQSPS TPPDLKQRVI ACLNKLADRD TLALASAELD SIARNLTHDS FSPFLNCIHN TDSSVKSPVR KQCVALLSVL
101: SRYHGDSLTP HLAKMVSTVI RRLRDPDSSV RSACAVATAD MSAHVTRQPF ASVAKPLIET LIQEGDSNLQ IGAALCLAAS VDAATDPESE QLRKSLPKIG
201: KLLKSDGFKA KAALLSAVGS IITAGGAGTK PVLDWLVPVL IEFLSSEDWA ARKSAAEALG KVATAEDLAS QYKKTCTTAL ESRRFDKVKS VRETMNRALN
301: LWKEVSTDDE ASLSPSRSST DDGNIGCFSS VTRSSTIDVG LKSARPKKVT PIMKRSPSLP VNRSYAATRQ KENLPKRNQG NMTMLVEEAS SVDNKGPHFT
401: PVKKSSEETE EKANSGGPDI IKHTISEKSR EDSKVSSFGG LRSGSRVAPC SDDGDSVKNC KDDVEESKKD SEELSLIREQ LALIENQQSS LLDLLQKFMG
501: TSQSGIQSLE SRVSGLEMAL DEISCDLAVS NGRVPRNSSG CAGDSCSKLP GTEFLSPKFW RKTEERPRNR NTANEMAAYD QGMRESTDTN NGQRGGSVFQ
601: KRSRRDQFQD CMHTTLQKPT TRLST

Arabidopsis Description

TOR1L4TORTIFOLIA1-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZH1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.