Factsheet for Zm00001d017987_P003

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05553	Sorghum	cytosol	93.63	93.02
TraesCS6A01G311500.1	Wheat	cytosol	75.82	78.78
Os02t0739900-01	Rice	cytosol, mitochondrion	78.27	78.27
TraesCS6D01G290800.1	Wheat	mitochondrion	78.92	77.78
TraesCS6B01G341700.1	Wheat	mitochondrion	78.1	77.1
Zm00001d016462_P001	Maize	cytosol	49.84	71.93
Zm00001d044760_P001	Maize	cytosol	62.75	63.26
Zm00001d037271_P001	Maize	cytosol	62.91	62.7
HORVU6Hr1G076760.1	Barley	nucleus	59.8	59.42
Zm00001d044701_P001	Maize	cytosol	44.93	56.47
CDX68449	Canola	cytosol	6.7	55.41
GSMUA_Achr7P02250_001	Banana	cytosol	40.03	44.14
Zm00001d017306_P002	Maize	cytosol	22.06	42.86
KRH03379	Soybean	cytosol, mitochondrion	38.56	38.69
KRH57001	Soybean	cytosol	38.56	38.63
KRH63453	Soybean	cytosol	36.6	36.01
KRH54469	Soybean	cytosol	36.27	35.63
VIT_17s0000g07470.t01	Wine grape	cytosol	36.6	35.11
PGSC0003DMT400063183	Potato	cytosol	35.13	34.62
Bra035420.1-P	Field mustard	cytosol, nucleus, plastid	25.33	33.77
AT1G59850.1	Thale cress	plastid	27.45	33.73
CDY24496	Canola	plastid	25.49	33.62
Solyc03g113680.2.1	Tomato	nucleus	34.31	33.55
CDY33611	Canola	cytosol, nucleus, plastid	25.0	33.48
Bra007853.1-P	Field mustard	nucleus	11.6	33.33
Bra035889.1-P	Field mustard	cytosol	30.07	32.74
CDY16768	Canola	cytosol	28.92	32.18
VIT_01s0026g01020.t01	Wine grape	cytosol	33.66	31.94
CDY62371	Canola	plastid	26.47	31.27
CDY00306	Canola	cytosol	29.25	30.81
KRH74717	Soybean	plastid	33.5	30.73
CDY56641	Canola	cytosol	28.92	30.68
Bra010100.1-P	Field mustard	cytosol	28.92	30.52
KRH69431	Soybean	endoplasmic reticulum, nucleus	32.52	30.29
AT5G62580.1	Thale cress	cytosol	30.39	30.24
AT1G27210.1	Thale cress	plastid	30.56	29.92
CDX87253	Canola	cytosol	28.76	29.68
CDY46411	Canola	plastid	28.92	29.21
CDY16232	Canola	plastid	30.07	29.21
Bra016316.1-P	Field mustard	plastid	28.76	29.04
Bra024646.1-P	Field mustard	plastid	29.9	28.68
Zm00001d018800_P001	Maize	extracellular, mitochondrion	7.35	28.48
PGSC0003DMT400058293	Potato	extracellular	29.09	27.73
CDY14680	Canola	cytosol, plastid	30.56	26.41
Solyc05g006550.2.1	Tomato	cytosol	28.27	26.05
Zm00001d013733_P002	Maize	mitochondrion	8.99	19.03
Zm00001d021378_P007	Maize	cytosol	23.04	16.63
Zm00001d021641_P002	Maize	plastid	23.86	15.75
Zm00001d006504_P005	Maize	plastid	22.55	14.85

Protein Annotations

Gene3D:1.25.10.10	MapMan:35.1	UniProt:A0A1D6HJT2	ProteinID:AQK74717.1	ProteinID:AQK74720.1	InterPro:ARM-like
InterPro:ARM-type_fold	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005874	GO:GO:0008017	InterPro:IPR011989
PANTHER:PTHR31355	PANTHER:PTHR31355:SF16	SUPFAM:SSF48371	InterPro:TORTIFOLIA1/SPIRAL2-like	UniParc:UPI000221E534	EnsemblPlantsGene:Zm00001d017987
EnsemblPlants:Zm00001d017987_P003	EnsemblPlants:Zm00001d017987_T003	SEG:seg	:	:	:

Description

Microtubule-associated protein TORTIFOLIA1

Coordinates

chr5:-:211412534..211416160

Molecular Weight (calculated)

66252.4 Da

IEP (calculated)

9.991

GRAVY (calculated)

-0.435

Length

612 amino acids

Sequence
(BLAST)

001: MGATTRREPL KQRVNRCLLK LSDRDTEAMA AAELEAIARA LEPDELPTFV SAVSDARPTD KTPLRRHALR ALALVAASHP RDVVAPLIPR ILAAALRRVR
101: DQDSSVRAAL VDTARAAAAA SASASTALRP LTDALLHEQD QCAQLAAALA TAAAVEASAV TDDLASYLHK LQPRLLKLLR SNAFKAKPAL ITLIGASATV
201: GGDAEVTASI PCLRDAVASD DWAARKAAAE ALAALALEHT DLLTTYKSSC VTFFEARRFD KVKIVRESIN RMIEAWKEIP GAEEDECSSA PPSASQSQRR
301: YSLTGSASDG RYPAASLGSN SVPSATRRSR LPVSRSSPPD VSPSVTKTYS PSSIRNKKLS PPSYRKARQA NNCNYKVEIA VAPDATPIKV VTEEKLLEGG
401: NVRGRLEARR ALFQGSQDRS AKLAGYKAGS RVVPYEGGGN LEEISEVEGR SERYAVQKDE SLSEIRTQLL QIENQQSSLL DLLQKFMGKS ENGMRSLETR
501: VHGLEMALDE ISRDLAFSSG RMSSREPDAK TCCIPSPKFW RRHNGGRSSS RFSVSDAANS SDGSRTSYKW ERQRFGLQGG FVTNPLAEPN ISSAGKTMVT
601: HEGRKKDKTL QK

Best Arabidopsis Sequence Match ( AT5G62580.1 )
(BLAST)

001: MATKNSKQNM SVLLTKLGDR DTFTMAAREL DLMARQIDPS SSSGNLQSFI SVILSVDTGD KPAVRKHCIH LLAVLSVSLP LNSLSPFLSK ILTRITRRLR
101: DPDSSIRSTC VAAVSAISSR TTKPPFYSAF MKPLADTLFT EQEVNAQIGA ALCLAAAIDS ASDPDPVRLG QTLLPRLEKL VKCNAFKAKS AGVVVIGSVI
201: GAGGLSGTSV SSGGLKGLVD CLLSFLVSED WAARKAAAEA LGRLATMERN ELGEFKAKCL KIFESRKYDK VKAVREVMNQ MMEAWKQVPD LSEEVSPPRS
301: NASSKGDASD GRYPSGSRVG STPAKSRTHL VNRSTPPGSS LATTARKQAN RKSIDQKKTS LTASLTKPNV RRRLEWKAGG ASIPTGVSLE DEQHCDHDEN
401: AKETSHSSHN TVQKLGGVSS SLNGNIPPSG ATMVTGHHVL SENPNSNNCK GLEDISLIRN QLVQIEQQQA NLMDLLQRFV GSSQHGMRGL ETRVHGLELA
501: LDEISYDLAV SNGRMSNGSS RNNCCLLPSG SFIKSKFWKK HDSKYSASRM STYRNRNAET TEIQNSRHRF NGSPGFIVNP LAEIRPDNDL QVCLTIEGRR
601: ETKPSKASET LKTTV

Arabidopsis Description

TOR1L3TORTIFOLIA1-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q6NPR6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.