CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017987_P003	Maize	cytosol, mitochondrion, nucleus, plastid	93.02	93.63
TraesCS6A01G311500.1	Wheat	cytosol	78.73	82.34
Os02t0739900-01	Rice	cytosol, mitochondrion	80.84	81.37
TraesCS6D01G290800.1	Wheat	mitochondrion	81.49	80.84
TraesCS6B01G341700.1	Wheat	mitochondrion	81.01	80.48
Zm00001d016462_P001	Maize	cytosol	50.81	73.82
KXG19701	Sorghum	cytosol	64.12	63.81
HORVU6Hr1G076760.1	Barley	nucleus	61.69	61.69
Zm00001d044701_P001	Maize	cytosol	45.29	57.29
CDX68449	Canola	cytosol	6.66	55.41
GSMUA_Achr7P02250_001	Banana	cytosol	40.26	44.68
Zm00001d017306_P002	Maize	cytosol	22.24	43.49
KRH57001	Soybean	cytosol	38.31	38.63
KRH03379	Soybean	cytosol, mitochondrion	38.15	38.52
KRH63453	Soybean	cytosol	36.53	36.17
KRH54469	Soybean	cytosol	36.2	35.79
VIT_17s0000g07470.t01	Wine grape	cytosol	36.36	35.11
PGSC0003DMT400063183	Potato	cytosol	35.06	34.78
Bra007853.1-P	Field mustard	nucleus	12.01	34.74
Bra035420.1-P	Field mustard	cytosol, nucleus, plastid	25.65	34.42
AT1G59850.1	Thale cress	plastid	27.76	34.34
CDY24496	Canola	plastid	25.81	34.27
CDY33611	Canola	cytosol, nucleus, plastid	25.16	33.92
Solyc03g113680.2.1	Tomato	nucleus	34.25	33.71
Bra035889.1-P	Field mustard	cytosol	29.87	32.74
VIT_01s0026g01020.t01	Wine grape	cytosol	33.93	32.4
CDY16768	Canola	cytosol	28.9	32.36
CDY62371	Canola	plastid	26.46	31.47
KRH74717	Soybean	plastid	33.93	31.33
KRH69431	Soybean	endoplasmic reticulum, nucleus	32.95	30.9
CDY00306	Canola	cytosol	29.06	30.81
CDY56641	Canola	cytosol	28.73	30.68
Bra010100.1-P	Field mustard	cytosol	28.57	30.34
AT5G62580.1	Thale cress	cytosol	30.03	30.08
AT1G27210.1	Thale cress	plastid	30.36	29.92
CDX87253	Canola	cytosol	28.41	29.51
CDY46411	Canola	plastid	28.73	29.21
CDY16232	Canola	plastid	29.87	29.21
Bra016316.1-P	Field mustard	plastid	28.57	29.04
Bra024646.1-P	Field mustard	plastid	30.03	29.0
PGSC0003DMT400058293	Potato	extracellular	29.55	28.35
Solyc05g006550.2.1	Tomato	cytosol	29.22	27.11
CDY14680	Canola	cytosol, plastid	30.19	26.27
EER99353	Sorghum	cytosol	22.89	16.85
EER99458	Sorghum	plastid	23.86	15.94

Protein Annotations

Gene3D:1.25.10.10	MapMan:35.1	EntrezGene:8075732	InterPro:ARM-like	InterPro:ARM-type_fold	UniProt:C5XZ71
ncoils:Coil	EnsemblPlants:EES05553	ProteinID:EES05553	ProteinID:EES05553.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005874
GO:GO:0008017	InterPro:IPR011989	PANTHER:PTHR31355	PANTHER:PTHR31355:SF16	EnsemblPlantsGene:SORBI_3004G243800	SUPFAM:SSF48371
unigene:Sbi.12737	InterPro:TORTIFOLIA1/SPIRAL2-like	UniParc:UPI0001A853BE	RefSeq:XP_002452577.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:+:59138508..59142210

Molecular Weight (calculated)

66580.9 Da

IEP (calculated)

9.855

GRAVY (calculated)

-0.435

Length

616 amino acids

Sequence
(BLAST)

001: MGTTARREPL KQRVNRCLLK LSDRDTEAMA AAELEAIARA LEPDELPAFV SAVSDARPTD KTPLRRHALR ALALVAASHP RDAVAPLVPR ILAAALRRVR
101: DQDSSVRAAL VDTARAAAAA SASASAALRP LTDALLHEQD QCAQLAAALA TAAAVEASAV TADLASYLHK LQPRLLKLLR SNAFKAKPAL ITLIGASAAM
201: AGDAEVTASI PCLRDAIASD DWAARKAAAE ALAALALEHT DLLTTYKSSC VTFFEARRFD KVKIVRESMN RMIEAWKEIP GAEEDECSSA PPPASQSQRR
301: SSLTGSASDG RYPAASLGSN SVPSSTRRSR LPVSRSSPPD VSPSVTKTNS PSSIRNKKLS PPSYRKVRQA NNCDYKVEIA VAPDATPIKV VTEEKLLKGG
401: NVRDRLEARR TLFQGSEDRS AKLAGHKAGS RVVPYEGGGN LEEISEVEGG SERYTVHKDE SLSEIRTQLL QIENQQSSLL DLLQKFMGKS ENGMNSLETR
501: VHGLEMALDE ISRDLAFSSG RMSNREPDVK TCCILSPKFW RRHNGGRSSS RFSASDPANS SDESRTSYKW ERQKFGLQGG FVTNPLAEPN ISSVGKTMVT
601: QEGRKKDTTL QKSRMG

Best Arabidopsis Sequence Match ( AT5G62580.1 )
(BLAST)

001: MATKNSKQNM SVLLTKLGDR DTFTMAAREL DLMARQIDPS SSSGNLQSFI SVILSVDTGD KPAVRKHCIH LLAVLSVSLP LNSLSPFLSK ILTRITRRLR
101: DPDSSIRSTC VAAVSAISSR TTKPPFYSAF MKPLADTLFT EQEVNAQIGA ALCLAAAIDS ASDPDPVRLG QTLLPRLEKL VKCNAFKAKS AGVVVIGSVI
201: GAGGLSGTSV SSGGLKGLVD CLLSFLVSED WAARKAAAEA LGRLATMERN ELGEFKAKCL KIFESRKYDK VKAVREVMNQ MMEAWKQVPD LSEEVSPPRS
301: NASSKGDASD GRYPSGSRVG STPAKSRTHL VNRSTPPGSS LATTARKQAN RKSIDQKKTS LTASLTKPNV RRRLEWKAGG ASIPTGVSLE DEQHCDHDEN
401: AKETSHSSHN TVQKLGGVSS SLNGNIPPSG ATMVTGHHVL SENPNSNNCK GLEDISLIRN QLVQIEQQQA NLMDLLQRFV GSSQHGMRGL ETRVHGLELA
501: LDEISYDLAV SNGRMSNGSS RNNCCLLPSG SFIKSKFWKK HDSKYSASRM STYRNRNAET TEIQNSRHRF NGSPGFIVNP LAEIRPDNDL QVCLTIEGRR
601: ETKPSKASET LKTTV

Arabidopsis Description

TOR1L3TORTIFOLIA1-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q6NPR6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.