Factsheet for Zm00001d017306_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016462_P001	Maize	cytosol	37.78	28.07
Zm00001d044701_P001	Maize	cytosol	40.0	25.87
Zm00001d018800_P001	Maize	extracellular, mitochondrion	12.06	24.05
EES05553	Sorghum	cytosol	43.49	22.24
Zm00001d017987_P003	Maize	cytosol, mitochondrion, nucleus, plastid	42.86	22.06
TraesCS6A01G311500.1	Wheat	cytosol	38.73	20.71
Os02t0739900-01	Rice	cytosol, mitochondrion	39.37	20.26
TraesCS6D01G290800.1	Wheat	mitochondrion	38.73	19.65
TraesCS6B01G341700.1	Wheat	mitochondrion	38.41	19.52
HORVU6Hr1G076760.1	Barley	nucleus	36.51	18.67
Zm00001d037271_P001	Maize	cytosol	33.97	17.43
Zm00001d044760_P001	Maize	cytosol	32.38	16.8
CDY33611	Canola	cytosol, nucleus, plastid	20.63	14.22
Bra035420.1-P	Field mustard	cytosol, nucleus, plastid	20.32	13.94
CDY24496	Canola	plastid	20.32	13.79
Bra035889.1-P	Field mustard	cytosol	24.13	13.52
CDY16768	Canola	cytosol	23.49	13.45
AT1G59850.1	Thale cress	plastid	21.27	13.45
KRH63453	Soybean	cytosol	26.35	13.34
KRH54469	Soybean	cytosol	25.71	13.0
VIT_17s0000g07470.t01	Wine grape	cytosol	26.03	12.85
KRH03379	Soybean	cytosol, mitochondrion	24.76	12.79
KRH57001	Soybean	cytosol	24.44	12.6
VIT_01s0026g01020.t01	Wine grape	cytosol	25.71	12.56
CDX87253	Canola	cytosol	23.49	12.48
CDY00306	Canola	cytosol	22.86	12.39
CDY56641	Canola	cytosol	22.54	12.3
Bra010100.1-P	Field mustard	cytosol	22.54	12.24
PGSC0003DMT400063183	Potato	cytosol	24.13	12.24
AT5G62580.1	Thale cress	cytosol	23.49	12.03
Solyc03g113680.2.1	Tomato	nucleus	23.49	11.82
CDY46411	Canola	plastid	21.9	11.39
AT1G27210.1	Thale cress	plastid	22.22	11.2
Bra016316.1-P	Field mustard	plastid	21.27	11.06
PGSC0003DMT400058293	Potato	extracellular	22.22	10.9
Solyc05g006550.2.1	Tomato	cytosol	22.86	10.84
CDY16232	Canola	plastid	21.59	10.79
Bra024646.1-P	Field mustard	plastid	21.59	10.66
KRH69431	Soybean	endoplasmic reticulum, nucleus	22.22	10.65
KRH74717	Soybean	plastid	22.22	10.49
GSMUA_Achr7P02250_001	Banana	cytosol	18.41	10.45
Zm00001d013733_P002	Maize	mitochondrion	9.21	10.03
Bra007853.1-P	Field mustard	nucleus	6.67	9.86
CDY62371	Canola	plastid	16.19	9.85
CDY14680	Canola	cytosol, plastid	21.9	9.75
Zm00001d021378_P007	Maize	cytosol	18.73	6.96
Zm00001d021641_P002	Maize	plastid	18.1	6.15
Zm00001d006504_P005	Maize	plastid	16.83	5.71
CDX68449	Canola	cytosol	1.27	5.41

Protein Annotations

EnsemblPlants:Zm00001d017306_P002	EnsemblPlants:Zm00001d017306_T002	EnsemblPlantsGene:Zm00001d017306	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005874	GO:GO:0008017
InterPro:ARM-type_fold	InterPro:TORTIFOLIA1/SPIRAL2-like	PANTHER:PTHR31355	PANTHER:PTHR31355:SF16	ProteinID:AQK72855.1	SEG:seg
SUPFAM:SSF48371	UniParc:UPI000843E330	UniProt:A0A1D6HDW5	MapMan:35.1	:	:

Description

ARM repeat superfamily protein

Coordinates

chr5:+:192243406..192247186

Molecular Weight (calculated)

34964.1 Da

IEP (calculated)

8.399

GRAVY (calculated)

-0.039

Length

315 amino acids

Sequence
(BLAST)

001: MDEGILEMCL QHSRARLPPD KQLAAEKSFA LYCKPVELYN IIQRRAIKNH SPIYRINRAC LLTNFSEFGN KDKTEATFII SVDLASYLHR LQPRLLKLLR
101: SNAFKAKPAL ITLIGACAAM GANAEVTASI TCLRDAIASD DWAARKAAAE ALAALALEHT DLLTTYKSSC VTFFEARRFD KVKVVQESMN QMIEAGKEIP
201: GAEEDECSSL CHQRPSHNED LLLQLGKCYT YFFFIYKLSC NYSGSASDGR YPAASLGSNS VPLATRKSIL SVSRSSLSDV STSVIFWTFS RLSGEAEVVL
301: RKRLVEQLLI SLINS

Best Arabidopsis Sequence Match ( AT5G62580.1 )
(BLAST)

001: MATKNSKQNM SVLLTKLGDR DTFTMAAREL DLMARQIDPS SSSGNLQSFI SVILSVDTGD KPAVRKHCIH LLAVLSVSLP LNSLSPFLSK ILTRITRRLR
101: DPDSSIRSTC VAAVSAISSR TTKPPFYSAF MKPLADTLFT EQEVNAQIGA ALCLAAAIDS ASDPDPVRLG QTLLPRLEKL VKCNAFKAKS AGVVVIGSVI
201: GAGGLSGTSV SSGGLKGLVD CLLSFLVSED WAARKAAAEA LGRLATMERN ELGEFKAKCL KIFESRKYDK VKAVREVMNQ MMEAWKQVPD LSEEVSPPRS
301: NASSKGDASD GRYPSGSRVG STPAKSRTHL VNRSTPPGSS LATTARKQAN RKSIDQKKTS LTASLTKPNV RRRLEWKAGG ASIPTGVSLE DEQHCDHDEN
401: AKETSHSSHN TVQKLGGVSS SLNGNIPPSG ATMVTGHHVL SENPNSNNCK GLEDISLIRN QLVQIEQQQA NLMDLLQRFV GSSQHGMRGL ETRVHGLELA
501: LDEISYDLAV SNGRMSNGSS RNNCCLLPSG SFIKSKFWKK HDSKYSASRM STYRNRNAET TEIQNSRHRF NGSPGFIVNP LAEIRPDNDL QVCLTIEGRR
601: ETKPSKASET LKTTV

Arabidopsis Description

TOR1L3TORTIFOLIA1-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q6NPR6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.