Factsheet for Bra016316.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003473.1-P
Bra014421.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27210.1	Bra003473.1-P	AT3G61790.1	21798944
AT1G27210.1	Bra014421.1-P	AT3G61790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46411	Canola	plastid	95.05	95.05
Bra024646.1-P	Field mustard	plastid	69.47	65.99
AT1G27210.1	Thale cress	plastid	61.22	59.36
Bra035420.1-P	Field mustard	cytosol, nucleus, plastid	37.13	49.02
VIT_01s0026g01020.t01	Wine grape	cytosol	42.41	39.84
KRH69431	Soybean	endoplasmic reticulum, nucleus	42.74	39.42
KRH74717	Soybean	plastid	43.07	39.13
Bra035889.1-P	Field mustard	cytosol	33.66	36.3
PGSC0003DMT400058293	Potato	extracellular	37.46	35.36
Bra010100.1-P	Field mustard	cytosol	33.5	35.0
Solyc05g006550.2.1	Tomato	cytosol	36.96	33.73
Bra007853.1-P	Field mustard	nucleus	11.22	31.92
GSMUA_Achr7P02250_001	Banana	cytosol	27.89	30.45
Os06t0244700-01	Rice	cytosol	25.58	29.36
Os02t0739900-01	Rice	cytosol, mitochondrion	29.54	29.25
TraesCS6B01G341700.1	Wheat	mitochondrion	29.7	29.03
TraesCS7A01G236800.1	Wheat	cytosol	30.03	29.03
Zm00001d037271_P001	Maize	cytosol	29.37	28.99
TraesCS6D01G290800.1	Wheat	mitochondrion	29.7	28.99
Zm00001d044760_P001	Maize	cytosol	28.88	28.83
Zm00001d017987_P003	Maize	cytosol, mitochondrion, nucleus, plastid	29.04	28.76
EES05553	Sorghum	cytosol	29.04	28.57
HORVU7Hr1G040280.1	Barley	peroxisome	29.21	28.55
TraesCS6A01G311500.1	Wheat	cytosol	27.56	28.35
KXG19701	Sorghum	cytosol	28.71	28.11
TraesCS7B01G103000.1	Wheat	plastid	30.36	26.06
TraesCS7D01G199100.1	Wheat	plastid	30.2	25.92
Zm00001d016462_P001	Maize	cytosol	16.83	24.06
HORVU6Hr1G076760.1	Barley	nucleus	22.61	22.24
Zm00001d017306_P002	Maize	cytosol	11.06	21.27
Zm00001d044701_P001	Maize	cytosol	15.68	19.51
Bra030470.1-P	Field mustard	cytosol	22.28	17.46
Bra026382.1-P	Field mustard	plastid	25.25	15.52

Protein Annotations

Gene3D:1.25.10.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	EnsemblPlantsGene:Bra016316	EnsemblPlants:Bra016316.1
EnsemblPlants:Bra016316.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005874	GO:GO:0008017	InterPro:IPR011989
UniProt:M4DII9	PANTHER:PTHR31355	PANTHER:PTHR31355:SF3	SUPFAM:SSF48371	InterPro:TORTIFOLIA1/SPIRAL2-like	UniParc:UPI0002546200
SEG:seg	:	:	:	:	:

Description

AT1G27210 (E=5e-119) | binding

Coordinates

chrA08:-:17855496..17858744

Molecular Weight (calculated)

65619.6 Da

IEP (calculated)

8.541

GRAVY (calculated)

-0.385

Length

606 amino acids

Sequence
(BLAST)

001: MSVNGRFPAS PPVSLSPASS SSPSSHSQSP PDLKQRVIAC LNKLADRDTL SLAAAELDSI ARNLTHDSFA SFLNCIHNTD SSSKSPVRKH SVAVLSLMSR
101: HHGESLSPHL SKMVSTVIRR LRDPDSSVRS ACAAATADIS AHVTTQLFAS VAKPLIETLI QEGDSNVQTG AAVCLAASVE AAADPEPEQL RKSLPKIGKL
201: LKSEAFKAKA ALLSAVGSII TAGGAGSKPV LDWLVPVLVE FLSSEDWAAR KAAAEGLSRV SAAEEELAWE YKKACTAALE SRKFDKVKSV RETMNRALSQ
301: WKEVANDVDE ALLSPCTSSN IDVGFKSSRL KKSTPMIKRS THRSYVATRQ QKENLPRRNV TVSVASREEE KVKSGGADTI IKHTISEKSK EDKKVHVFGC
401: GLRSGSRVAP CSEDGDDSCD SVVKNGKDGV DEIRKDSEEL SLIREQLAMI ENQQSSLLEL LQKFMGSSQS GIQSLESRVS GLEMALDEIS CDLAVSNGRV
501: PKTSSCGGES CSKLPGAEFL SHKYWRKAEE RPMQTRSTAS DTAAYENSFD QGMQKRGSVF QKRPGRNQFQ DSMHTTLQKP TTRVDPTLAF GRAWVILVLD
601: GSYFFS

Best Arabidopsis Sequence Match ( AT1G27210.1 )
(BLAST)

001: MSVHGRFPAS PPISLSPSSS STSPSSQSPS TPPDLKQRVI ACLNKLADRD TLALASAELD SIARNLTHDS FSPFLNCIHN TDSSVKSPVR KQCVALLSVL
101: SRYHGDSLTP HLAKMVSTVI RRLRDPDSSV RSACAVATAD MSAHVTRQPF ASVAKPLIET LIQEGDSNLQ IGAALCLAAS VDAATDPESE QLRKSLPKIG
201: KLLKSDGFKA KAALLSAVGS IITAGGAGTK PVLDWLVPVL IEFLSSEDWA ARKSAAEALG KVATAEDLAS QYKKTCTTAL ESRRFDKVKS VRETMNRALN
301: LWKEVSTDDE ASLSPSRSST DDGNIGCFSS VTRSSTIDVG LKSARPKKVT PIMKRSPSLP VNRSYAATRQ KENLPKRNQG NMTMLVEEAS SVDNKGPHFT
401: PVKKSSEETE EKANSGGPDI IKHTISEKSR EDSKVSSFGG LRSGSRVAPC SDDGDSVKNC KDDVEESKKD SEELSLIREQ LALIENQQSS LLDLLQKFMG
501: TSQSGIQSLE SRVSGLEMAL DEISCDLAVS NGRVPRNSSG CAGDSCSKLP GTEFLSPKFW RKTEERPRNR NTANEMAAYD QGMRESTDTN NGQRGGSVFQ
601: KRSRRDQFQD CMHTTLQKPT TRLST

Arabidopsis Description

TOR1L4TORTIFOLIA1-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZH1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.