Factsheet for VIT_01s0026g01020.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0426g00040.t01
VIT_00s0663g00030.t01
VIT_00s0726g00020.t01
VIT_02s0025g01660.t01
VIT_15s0046g00380.t01
VIT_15s0046g00390.t01
VIT_15s0046g00400.t01
VIT_15s0046g00410.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27210.1	VIT_00s0426g00040.t01	AT3G61790.1	21798944
AT1G27210.1	VIT_00s0663g00030.t01	AT3G61790.1	21798944
AT1G27210.1	VIT_00s0726g00020.t01	AT3G61790.1	21798944
AT1G27210.1	VIT_02s0025g01660.t01	AT3G61790.1	21798944
AT1G27210.1	VIT_15s0046g00380.t01	AT3G61790.1	21798944
AT1G27210.1	VIT_15s0046g00390.t01	AT3G61790.1	21798944
AT1G27210.1	VIT_15s0046g00400.t01	AT3G61790.1	21798944
AT1G27210.1	VIT_15s0046g00410.t01	AT3G61790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g07470.t01	Wine grape	cytosol	51.47	52.04
CDX68449	Canola	cytosol	5.74	50.0
KRH74717	Soybean	plastid	47.91	46.33
KRH69431	Soybean	endoplasmic reticulum, nucleus	46.82	45.97
PGSC0003DMT400058293	Potato	extracellular	45.74	45.95
Bra035420.1-P	Field mustard	cytosol, nucleus, plastid	32.56	45.75
AT1G59850.1	Thale cress	plastid	35.19	45.58
CDY24496	Canola	plastid	32.71	45.47
CDY33611	Canola	cytosol, nucleus, plastid	32.09	45.3
Solyc05g006550.2.1	Tomato	cytosol	44.96	43.67
AT1G27210.1	Thale cress	plastid	41.86	43.2
CDY46411	Canola	plastid	40.0	42.57
Bra016316.1-P	Field mustard	plastid	39.84	42.41
CDY62371	Canola	plastid	33.95	42.28
Bra024646.1-P	Field mustard	plastid	41.24	41.69
CDY16232	Canola	plastid	40.47	41.43
GSMUA_Achr7P02250_001	Banana	cytosol	32.4	37.66
CDY14680	Canola	cytosol, plastid	40.47	36.86
Zm00001d037271_P001	Maize	cytosol	33.49	35.18
Os02t0739900-01	Rice	cytosol, mitochondrion	33.18	34.97
KXG19701	Sorghum	cytosol	33.02	34.41
Bra007853.1-P	Field mustard	nucleus	11.32	34.27
Os06t0244700-01	Rice	cytosol	27.91	34.09
EES05553	Sorghum	cytosol	32.4	33.93
Zm00001d017987_P003	Maize	cytosol, mitochondrion, nucleus, plastid	31.94	33.66
TraesCS6B01G341700.1	Wheat	mitochondrion	32.25	33.55
TraesCS6D01G290800.1	Wheat	mitochondrion	32.09	33.33
Zm00001d044760_P001	Maize	cytosol	31.32	33.28
TraesCS6A01G311500.1	Wheat	cytosol	29.92	32.77
TraesCS7A01G236800.1	Wheat	cytosol	31.78	32.7
HORVU7Hr1G040280.1	Barley	peroxisome	30.7	31.94
TraesCS7D01G199100.1	Wheat	plastid	31.94	29.18
TraesCS7B01G103000.1	Wheat	plastid	31.94	29.18
Zm00001d016462_P001	Maize	cytosol	18.29	27.83
HORVU6Hr1G076760.1	Barley	nucleus	25.89	27.11
Zm00001d017306_P002	Maize	cytosol	12.56	25.71
Zm00001d044701_P001	Maize	cytosol	17.21	22.79
VIT_11s0065g00460.t01	Wine grape	cytosol	26.67	20.7
VIT_19s0090g00020.t01	Wine grape	plastid	26.36	18.12

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100260313	wikigene:100260313	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold
ProteinID:CCB56617	ProteinID:CCB56617.1	UniProt:F6HPI9	EMBL:FN596002	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005874
GO:GO:0008017	InterPro:HEAT	InterPro:IPR011989	EntrezGene:LOC100260313	wikigene:LOC100260313	PFAM:PF02985
PANTHER:PTHR31355	PANTHER:PTHR31355:SF15	SUPFAM:SSF48371	InterPro:TORTIFOLIA1/SPIRAL2-like	UniParc:UPI000210856A	ArrayExpress:VIT_01s0026g01020
EnsemblPlantsGene:VIT_01s0026g01020	EnsemblPlants:VIT_01s0026g01020.t01	unigene:Vvi.21360	RefSeq:XP_002267941	RefSeq:XP_002267941.1	RefSeq:XP_010652825.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:9978896..9983384

Molecular Weight (calculated)

70321.7 Da

IEP (calculated)

8.280

GRAVY (calculated)

-0.338

Length

645 amino acids

Sequence
(BLAST)

001: MSLSKKTVST RDLKHRVITC LNKLSDRDTL AVGTAELESI ARNLTHDSFS PFLSCLYGTD SSEKSPVRKQ CVRLLGVLSE THGDSLSPHL SKMLSNVVRR
101: LRDSDSAVRL ACVDAVGVMS SQITKPPFSA FLKPLTDSIL LEQDYNLQIG SALCIAAAIE AAPDPEPEQL LKLLPRLLKL AKSESFRAKP ALLSLIGSII
201: GAGGASTRGV LNSLVPCLVE FLSSEDWAAR KASAEALARL ALVERDLATE FKSSSLSSLE SRRFDKVKVV RDTMNRTLDL WKELPCDSNG LLPLSPSKAS
301: SKDNGAGGCF PPASKISCDV GFETPQPKKI IPTRSPPSDN SLVTTARKRS PLQSSNNGKS TTAMFRKLDC KKPSDWKVEV AVPHPSSSKV ACEDDLKRRY
401: LVVSDSEENG NCGDSRPETN RVLFSKISNE KMHKFGCLRS GSRIVPFHEN NNSESAVVDS NATEEEIYEN QKDIEDLSLI RKQLIQIENQ QSSMLNLLQR
501: FIGNSQSGIN SLETRVNGLE MVLEEISFDL AISSGRVSNS DSAGNTCCKL PGAEFLSSKF WKRTEGHTTS RFSSTGSIQA LTTINNMPNK YASNMVDEQK
601: LQHQNLDGFV ANPLADIHGT SRTLIDGASP ATQTMPVNLS RRLAA

Best Arabidopsis Sequence Match ( AT1G27210.1 )
(BLAST)

001: MSVHGRFPAS PPISLSPSSS STSPSSQSPS TPPDLKQRVI ACLNKLADRD TLALASAELD SIARNLTHDS FSPFLNCIHN TDSSVKSPVR KQCVALLSVL
101: SRYHGDSLTP HLAKMVSTVI RRLRDPDSSV RSACAVATAD MSAHVTRQPF ASVAKPLIET LIQEGDSNLQ IGAALCLAAS VDAATDPESE QLRKSLPKIG
201: KLLKSDGFKA KAALLSAVGS IITAGGAGTK PVLDWLVPVL IEFLSSEDWA ARKSAAEALG KVATAEDLAS QYKKTCTTAL ESRRFDKVKS VRETMNRALN
301: LWKEVSTDDE ASLSPSRSST DDGNIGCFSS VTRSSTIDVG LKSARPKKVT PIMKRSPSLP VNRSYAATRQ KENLPKRNQG NMTMLVEEAS SVDNKGPHFT
401: PVKKSSEETE EKANSGGPDI IKHTISEKSR EDSKVSSFGG LRSGSRVAPC SDDGDSVKNC KDDVEESKKD SEELSLIREQ LALIENQQSS LLDLLQKFMG
501: TSQSGIQSLE SRVSGLEMAL DEISCDLAVS NGRVPRNSSG CAGDSCSKLP GTEFLSPKFW RKTEERPRNR NTANEMAAYD QGMRESTDTN NGQRGGSVFQ
601: KRSRRDQFQD CMHTTLQKPT TRLST

Arabidopsis Description

TOR1L4TORTIFOLIA1-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZH1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.