CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67865
CDX89132
CDY25077
CDY43950

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27210.1	CDX67865	AT3G61790.1	21798944
AT1G27210.1	CDX89132	AT3G61790.1	21798944
AT1G27210.1	CDY25077	AT3G61790.1	21798944
AT1G27210.1	CDY43950	AT3G61790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16232	Canola	plastid	73.31	82.38
AT1G27210.1	Thale cress	plastid	61.58	69.76
CDY62371	Canola	plastid	49.86	68.15
CDY46411	Canola	plastid	57.06	66.67
CDX68449	Canola	cytosol	6.64	63.51
CDY33611	Canola	cytosol, nucleus, plastid	32.34	50.11
CDY24496	Canola	plastid	32.49	49.57
KRH74717	Soybean	plastid	38.42	40.78
KRH69431	Soybean	endoplasmic reticulum, nucleus	37.57	40.49
VIT_01s0026g01020.t01	Wine grape	cytosol	36.86	40.47
CDY16768	Canola	cytosol	29.24	37.64
PGSC0003DMT400058293	Potato	extracellular	33.62	37.07
Solyc05g006550.2.1	Tomato	cytosol	33.33	35.54
CDY00306	Canola	cytosol	28.95	35.28
CDY56641	Canola	cytosol	28.67	35.18
CDX87253	Canola	cytosol	29.24	34.91
GSMUA_Achr7P02250_001	Banana	cytosol	24.01	30.63
Zm00001d017987_P003	Maize	cytosol, mitochondrion, nucleus, plastid	26.41	30.56
Os02t0739900-01	Rice	cytosol, mitochondrion	26.41	30.56
Zm00001d037271_P001	Maize	cytosol	26.41	30.46
EES05553	Sorghum	cytosol	26.27	30.19
Zm00001d044760_P001	Maize	cytosol	25.85	30.15
HORVU7Hr1G040280.1	Barley	peroxisome	26.27	30.0
TraesCS7A01G236800.1	Wheat	cytosol	26.55	29.98
KXG19701	Sorghum	cytosol	26.13	29.89
TraesCS6B01G341700.1	Wheat	mitochondrion	25.99	29.68
Os06t0244700-01	Rice	cytosol	21.89	29.36
TraesCS6D01G290800.1	Wheat	mitochondrion	25.71	29.31
TraesCS6A01G311500.1	Wheat	cytosol	23.87	28.69
TraesCS7D01G199100.1	Wheat	plastid	26.55	26.63
TraesCS7B01G103000.1	Wheat	plastid	26.41	26.49
Zm00001d016462_P001	Maize	cytosol	13.84	23.11
HORVU6Hr1G076760.1	Barley	nucleus	20.06	23.05
Zm00001d017306_P002	Maize	cytosol	9.75	21.9
Zm00001d044701_P001	Maize	cytosol	13.98	20.33
CDY38410	Canola	nucleus	22.32	20.13
CDY29271	Canola	plastid	22.6	18.58
CDX78782	Canola	nucleus	21.61	18.28
CDY29609	Canola	cytosol	19.49	17.85
CDX89282	Canola	plastid	22.46	16.72
CDY07335	Canola	cytosol	19.07	16.28

Protein Annotations

Gene3D:1.25.10.10	MapMan:35.1	UniProt:A0A078FJS4	InterPro:ARM-like	InterPro:ARM-type_fold	EnsemblPlants:CDY14680
ProteinID:CDY14680	ProteinID:CDY14680.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005874	GO:GO:0008017
EnsemblPlantsGene:GSBRNA2T00084473001	InterPro:HEAT	InterPro:HEAT_type_2	InterPro:IPR011989	InterPro:IPR021133	PFAM:PF02985
PFscan:PS50077	PANTHER:PTHR31355	PANTHER:PTHR31355:SF3	SUPFAM:SSF48371	InterPro:TORTIFOLIA1/SPIRAL2-like	UniParc:UPI0004EEE38A
SEG:seg	:	:	:	:	:

Description

BnaC05g19370DBnaC05g19370D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FJS4]

Coordinates

chrLK032046:+:214850..224796

Molecular Weight (calculated)

76478.4 Da

IEP (calculated)

8.659

GRAVY (calculated)

-0.455

Length

708 amino acids

Sequence
(BLAST)

001: MSIHGRFPPS PPVSSSPNSQ SPSPPDLKQR VIACLNKLAD RDTLALATAE LDSIARSLTH DSFSSFLSCI HNTDSSCKSP VRKQCVAVLS LMSRHHGDSL
101: SPHLAKMVST VIRRLRDPDS SVRSACAAAT ADISAHVTAQ PFTSVAKPLI ETLIQEGDSN AQIGAALCLA AAVEAAADPD SEQLRKSLPK IGKLLKSEAF
201: KAKAALLSAV GSIITAGGAG TKPVLDWLVP VLIEFLSSED WAARKSAAEA LGKVATAEEL ASQYKKASTA ALESRRFDKV KSVRQTMNQA LSQWKEVSSG
301: LDEALLSPSR SSTDDGGSIG CFSSVTRSSS IEVGCKSSRP KKATPIMKRS PSLPVSRSYG TTRQQKENLP KRNVTMLAAS IVDDKKGPQF PPVKQSLEDR
401: NDEASSGGPD IIKHTISEKS REDKKGHGFC GGLRSGSRVA PCSDDGDDSC DPVVKKCKDD VDESRKDNEE LSLIREQLAM IENQQSSLLD LLQKFMGSSQ
501: SGIQSLESRV SGLEMALDEL SCDLAVSNGR VPKCNSCGGE SCSKLPGTEF LSPKFWRKTE ERPTQTRTRN AASEMAAQEN SFDQGISTDV NKVGQRGGGS
601: VYQKRSARNQ FQDSMHTTTR RRLSDPPFER DSKMIVAWRD SSMPTGGGID HNTLTIITIV DAYQTVTASV ANLVKLVFPS SRDLDRYCLP HRQRSESFNA
701: RIPFRTTI

Best Arabidopsis Sequence Match ( AT1G27210.1 )
(BLAST)

001: MSVHGRFPAS PPISLSPSSS STSPSSQSPS TPPDLKQRVI ACLNKLADRD TLALASAELD SIARNLTHDS FSPFLNCIHN TDSSVKSPVR KQCVALLSVL
101: SRYHGDSLTP HLAKMVSTVI RRLRDPDSSV RSACAVATAD MSAHVTRQPF ASVAKPLIET LIQEGDSNLQ IGAALCLAAS VDAATDPESE QLRKSLPKIG
201: KLLKSDGFKA KAALLSAVGS IITAGGAGTK PVLDWLVPVL IEFLSSEDWA ARKSAAEALG KVATAEDLAS QYKKTCTTAL ESRRFDKVKS VRETMNRALN
301: LWKEVSTDDE ASLSPSRSST DDGNIGCFSS VTRSSTIDVG LKSARPKKVT PIMKRSPSLP VNRSYAATRQ KENLPKRNQG NMTMLVEEAS SVDNKGPHFT
401: PVKKSSEETE EKANSGGPDI IKHTISEKSR EDSKVSSFGG LRSGSRVAPC SDDGDSVKNC KDDVEESKKD SEELSLIREQ LALIENQQSS LLDLLQKFMG
501: TSQSGIQSLE SRVSGLEMAL DEISCDLAVS NGRVPRNSSG CAGDSCSKLP GTEFLSPKFW RKTEERPRNR NTANEMAAYD QGMRESTDTN NGQRGGSVFQ
601: KRSRRDQFQD CMHTTLQKPT TRLST

Arabidopsis Description

TOR1L4TORTIFOLIA1-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZH1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.