CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00306	Canola	cytosol	92.2	91.57
CDY16768	Canola	cytosol	67.59	70.91
CDX87253	Canola	cytosol	70.02	68.13
AT5G62580.1	Thale cress	cytosol	68.8	64.55
CDX68449	Canola	cytosol	6.07	47.3
KRH57001	Soybean	cytosol	44.89	42.39
KRH03379	Soybean	cytosol, mitochondrion	44.37	41.97
VIT_17s0000g07470.t01	Wine grape	cytosol	46.1	41.69
KRH54469	Soybean	cytosol	44.02	40.77
PGSC0003DMT400063183	Potato	cytosol	43.67	40.58
KRH63453	Soybean	cytosol	43.67	40.51
Solyc03g113680.2.1	Tomato	nucleus	42.98	39.62
CDY33611	Canola	cytosol, nucleus, plastid	28.25	35.67
CDY24496	Canola	plastid	28.6	35.56
CDY62371	Canola	plastid	29.81	33.2
CDY46411	Canola	plastid	34.32	32.67
CDY16232	Canola	plastid	35.36	32.38
GSMUA_Achr7P02250_001	Banana	cytosol	29.12	30.27
Os02t0739900-01	Rice	cytosol, mitochondrion	31.89	30.07
TraesCS7A01G236800.1	Wheat	cytosol	32.24	29.67
Zm00001d037271_P001	Maize	cytosol	31.2	29.32
Zm00001d017987_P003	Maize	cytosol, mitochondrion, nucleus, plastid	30.68	28.92
EES05553	Sorghum	cytosol	30.68	28.73
TraesCS6A01G311500.1	Wheat	cytosol	29.29	28.69
CDY14680	Canola	cytosol, plastid	35.18	28.67
TraesCS6D01G290800.1	Wheat	mitochondrion	30.68	28.5
HORVU7Hr1G040280.1	Barley	peroxisome	30.5	28.39
TraesCS6B01G341700.1	Wheat	mitochondrion	30.5	28.39
Zm00001d044760_P001	Maize	cytosol	29.64	28.17
KXG19701	Sorghum	cytosol	30.16	28.11
Os06t0244700-01	Rice	cytosol	25.65	28.03
TraesCS7B01G103000.1	Wheat	plastid	32.24	26.35
TraesCS7D01G199100.1	Wheat	plastid	31.54	25.78
HORVU6Hr1G076760.1	Barley	nucleus	24.96	23.38
Zm00001d016462_P001	Maize	cytosol	16.64	22.64
Zm00001d017306_P002	Maize	cytosol	12.3	22.54
Zm00001d044701_P001	Maize	cytosol	17.16	20.33
CDY38410	Canola	nucleus	24.26	17.83
CDX78782	Canola	nucleus	24.09	16.61
CDY29271	Canola	plastid	23.4	15.68
CDX89282	Canola	plastid	24.09	14.62
CDY07335	Canola	cytosol	20.62	14.35
CDY29609	Canola	cytosol	19.06	14.23

Protein Annotations

Gene3D:1.25.10.10	MapMan:35.1	UniProt:A0A078J2W7	InterPro:ARM-like	InterPro:ARM-type_fold	EnsemblPlants:CDY56641
ProteinID:CDY56641	ProteinID:CDY56641.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005874	GO:GO:0008017	EnsemblPlantsGene:GSBRNA2T00019870001
InterPro:HEAT	InterPro:IPR011989	PFAM:PF02985	PANTHER:PTHR31355	PANTHER:PTHR31355:SF8	SUPFAM:SSF48371
InterPro:TORTIFOLIA1/SPIRAL2-like	UniParc:UPI0004EEE603	SEG:seg	:	:	:

Description

BnaCnng30840DBnaCnng30840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J2W7]

Coordinates

chrLK033507:+:26962..29479

Molecular Weight (calculated)

62292.3 Da

IEP (calculated)

10.365

GRAVY (calculated)

-0.422

Length

577 amino acids

Sequence
(BLAST)

001: MAKNSKQNMS VLLTKLGERD TFTMAARELD LMARQIDPTS GNLQPFISVI LSADTGDKPA VRKHCIHLLA VLSVSLPPNS LSPFLSKILA RVTRRLRDPD
101: SSIRSTCVAA VSAISSRTTK PPFASAFMKP LAEALFTEQE VNAQIGAALC LAAAIDAAED PDPVRLGEVL LPRVEKLVKC KAFKAKSAGV VVIGSVIGAG
201: GVSGGGGLKG LVDCLVSFLS SEDWAARKAA AEALGKLATV ERNGLGEFKA KSLKIFESKR YDKVKAVRDV MNQMMEAWRQ VPDLSEEVSP PRSNTSSKGD
301: ASDGRYPLSG SRAASTPGKP RTTPPGSSLA TTARKRTNIK SSDQKKTSSV PSRVKSSVRR RLDWKAGGEP LAEEYHEHNQ NTKEVSQSNH EKMQKLGSVG
401: SSLTGNPPLS AATGHHHVLS ENQNSSNNCK GFEDMSLIRS QLVQIEQQQS NLMDLLQRFV GSSQNGMRAL ETRVHGLEIA MDEISYDLAV SNGRMSNGSG
501: RNSCCLIPPG SFVRSKFWKK PEQQQYSASR LATYRNRNAQ TMGTRDSRQR FNGAAGFIVN PLAEVRPDHG SAGIPHN

Best Arabidopsis Sequence Match ( AT5G62580.1 )
(BLAST)

001: MATKNSKQNM SVLLTKLGDR DTFTMAAREL DLMARQIDPS SSSGNLQSFI SVILSVDTGD KPAVRKHCIH LLAVLSVSLP LNSLSPFLSK ILTRITRRLR
101: DPDSSIRSTC VAAVSAISSR TTKPPFYSAF MKPLADTLFT EQEVNAQIGA ALCLAAAIDS ASDPDPVRLG QTLLPRLEKL VKCNAFKAKS AGVVVIGSVI
201: GAGGLSGTSV SSGGLKGLVD CLLSFLVSED WAARKAAAEA LGRLATMERN ELGEFKAKCL KIFESRKYDK VKAVREVMNQ MMEAWKQVPD LSEEVSPPRS
301: NASSKGDASD GRYPSGSRVG STPAKSRTHL VNRSTPPGSS LATTARKQAN RKSIDQKKTS LTASLTKPNV RRRLEWKAGG ASIPTGVSLE DEQHCDHDEN
401: AKETSHSSHN TVQKLGGVSS SLNGNIPPSG ATMVTGHHVL SENPNSNNCK GLEDISLIRN QLVQIEQQQA NLMDLLQRFV GSSQHGMRGL ETRVHGLELA
501: LDEISYDLAV SNGRMSNGSS RNNCCLLPSG SFIKSKFWKK HDSKYSASRM STYRNRNAET TEIQNSRHRF NGSPGFIVNP LAEIRPDNDL QVCLTIEGRR
601: ETKPSKASET LKTTV

Arabidopsis Description

TOR1L3TORTIFOLIA1-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q6NPR6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.