Factsheet for Zm00001d037271_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044760_P001	Maize	cytosol	83.22	84.18
KXG19701	Sorghum	cytosol	83.39	82.71
Os06t0244700-01	Rice	cytosol	60.75	70.64
TraesCS7A01G236800.1	Wheat	cytosol	71.66	70.18
HORVU7Hr1G040280.1	Barley	peroxisome	68.89	68.23
Zm00001d017987_P003	Maize	cytosol, mitochondrion, nucleus, plastid	62.7	62.91
TraesCS7D01G199100.1	Wheat	plastid	71.99	62.61
TraesCS7B01G103000.1	Wheat	plastid	71.01	61.76
Zm00001d016462_P001	Maize	cytosol	34.53	50.0
CDX68449	Canola	cytosol	6.03	50.0
GSMUA_Achr7P02250_001	Banana	cytosol	38.11	42.16
Zm00001d044701_P001	Maize	cytosol	32.25	40.66
KRH03379	Soybean	cytosol, mitochondrion	36.32	36.56
KRH57001	Soybean	cytosol	36.32	36.5
VIT_17s0000g07470.t01	Wine grape	cytosol	36.97	35.58
AT1G59850.1	Thale cress	plastid	28.18	34.74
Zm00001d017306_P002	Maize	cytosol	17.43	33.97
KRH54469	Soybean	cytosol	34.36	33.87
CDY33611	Canola	cytosol, nucleus, plastid	25.08	33.7
KRH63453	Soybean	cytosol	34.04	33.6
VIT_01s0026g01020.t01	Wine grape	cytosol	35.18	33.49
Bra035420.1-P	Field mustard	cytosol, nucleus, plastid	24.92	33.33
CDY24496	Canola	plastid	25.08	33.19
Bra035889.1-P	Field mustard	cytosol	30.29	33.1
CDY16768	Canola	cytosol	29.48	32.91
PGSC0003DMT400063183	Potato	cytosol	33.22	32.85
Solyc03g113680.2.1	Tomato	nucleus	32.74	32.11
Bra007853.1-P	Field mustard	nucleus	10.91	31.46
CDY56641	Canola	cytosol	29.32	31.2
KRH69431	Soybean	endoplasmic reticulum, nucleus	33.06	30.9
CDY00306	Canola	cytosol	29.15	30.81
KRH74717	Soybean	plastid	33.39	30.73
CDY62371	Canola	plastid	25.73	30.5
AT5G62580.1	Thale cress	cytosol	30.13	30.08
CDX87253	Canola	cytosol	28.99	30.02
Bra010100.1-P	Field mustard	cytosol	28.34	30.0
CDY16232	Canola	plastid	30.62	29.84
AT1G27210.1	Thale cress	plastid	30.29	29.76
Bra024646.1-P	Field mustard	plastid	30.78	29.62
Bra016316.1-P	Field mustard	plastid	28.99	29.37
CDY46411	Canola	plastid	28.99	29.37
Zm00001d018800_P001	Maize	extracellular, mitochondrion	7.49	29.11
PGSC0003DMT400058293	Potato	extracellular	29.97	28.66
Solyc05g006550.2.1	Tomato	cytosol	29.48	27.26
CDY14680	Canola	cytosol, plastid	30.46	26.41
Zm00001d013733_P002	Maize	mitochondrion	8.96	19.03
Zm00001d021641_P002	Maize	plastid	23.62	15.64
Zm00001d006504_P005	Maize	plastid	22.96	15.18
Zm00001d021378_P007	Maize	cytosol	20.2	14.62

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:107457590	MapMan:35.1	UniProt:A0A1D6LW37	ProteinID:AQK83463.1	InterPro:ARM-like
InterPro:ARM-type_fold	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005874	GO:GO:0008017	InterPro:IPR011989
PANTHER:PTHR31355	PANTHER:PTHR31355:SF16	SUPFAM:SSF48371	InterPro:TORTIFOLIA1/SPIRAL2-like	UniParc:UPI000221EE4B	EnsemblPlantsGene:Zm00001d037271
EnsemblPlants:Zm00001d037271_P001	EnsemblPlants:Zm00001d037271_T001	SEG:seg	:	:	:

Description

ARM repeat superfamily protein

Coordinates

chr6:+:118909983..118914417

Molecular Weight (calculated)

66350.0 Da

IEP (calculated)

8.268

GRAVY (calculated)

-0.500

Length

614 amino acids

Sequence
(BLAST)

001: MGPAPREPMK QRVNRCLLRL SDRDTEAMAA AELDAIAREL DADELPVFVA AVSDARPTDR TPLRRHSLRL LALVAGEHPR DAVAPLVPRL LAAALRRVRD
101: PDSSVRAALV DAARAAAGAA ASPPAALAPL ADAVLHEQDQ CAQLAAALAA AAAVEASEPT DDLAAYLRGL LPRLYKLLRS AAFKAKPALI SLIGAASAAS
201: GGGAASAAVP CLRDALTADD WAARKAAAEA LALLALEHGD DLVSHKSSCI TVFEAKRFDK VKIVRESMNR LIEAWKEIPD LDEEVCSLPS SQSRSSLTDT
301: ASDGRYPADS SGSTSSPSIT RRNSWPTNRQ PQPDGSNNAI NRKGSPPSIV AKKNLPPSRR STDQFKKSED RVVVTTAPDA TPIKMVAEEK LLKEGNVRER
401: LEARRVLFQK TGDKGYKKVA GPKSGSRVVP YSGEGDGDSE ETAETEDAPE EFQSAHKDED LSKIRMQLVQ IENQQASLLN LLQKFMGSSQ NGIRSLETRV
501: NGLEMVLDEI SRDLAASSGR IPNSEPDTNA CCILSPKFWR RHDGGRYTSR YPISDAANYS EESRSPYKWD RQQKFGVHGG FVTNPLAEPN DSSVRSIAGS
601: QQGRRRDSAQ YRSR

Best Arabidopsis Sequence Match ( AT1G27210.1 )
(BLAST)

001: MSVHGRFPAS PPISLSPSSS STSPSSQSPS TPPDLKQRVI ACLNKLADRD TLALASAELD SIARNLTHDS FSPFLNCIHN TDSSVKSPVR KQCVALLSVL
101: SRYHGDSLTP HLAKMVSTVI RRLRDPDSSV RSACAVATAD MSAHVTRQPF ASVAKPLIET LIQEGDSNLQ IGAALCLAAS VDAATDPESE QLRKSLPKIG
201: KLLKSDGFKA KAALLSAVGS IITAGGAGTK PVLDWLVPVL IEFLSSEDWA ARKSAAEALG KVATAEDLAS QYKKTCTTAL ESRRFDKVKS VRETMNRALN
301: LWKEVSTDDE ASLSPSRSST DDGNIGCFSS VTRSSTIDVG LKSARPKKVT PIMKRSPSLP VNRSYAATRQ KENLPKRNQG NMTMLVEEAS SVDNKGPHFT
401: PVKKSSEETE EKANSGGPDI IKHTISEKSR EDSKVSSFGG LRSGSRVAPC SDDGDSVKNC KDDVEESKKD SEELSLIREQ LALIENQQSS LLDLLQKFMG
501: TSQSGIQSLE SRVSGLEMAL DEISCDLAVS NGRVPRNSSG CAGDSCSKLP GTEFLSPKFW RKTEERPRNR NTANEMAAYD QGMRESTDTN NGQRGGSVFQ
601: KRSRRDQFQD CMHTTLQKPT TRLST

Arabidopsis Description

TOR1L4TORTIFOLIA1-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZH1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.