Factsheet for Bra024646.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 6
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003473.1-P
Bra014421.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27210.1	Bra003473.1-P	AT3G61790.1	21798944
AT1G27210.1	Bra014421.1-P	AT3G61790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16232	Canola	plastid	94.67	95.87
AT1G27210.1	Thale cress	plastid	70.06	71.52
Bra016316.1-P	Field mustard	plastid	65.99	69.47
Bra035420.1-P	Field mustard	cytosol, nucleus, plastid	36.05	50.11
VIT_01s0026g01020.t01	Wine grape	cytosol	41.69	41.24
KRH69431	Soybean	endoplasmic reticulum, nucleus	42.16	40.94
KRH74717	Soybean	plastid	42.79	40.93
PGSC0003DMT400058293	Potato	extracellular	37.46	37.23
Bra035889.1-P	Field mustard	cytosol	32.29	36.65
Solyc05g006550.2.1	Tomato	cytosol	37.3	35.84
Bra010100.1-P	Field mustard	cytosol	31.66	34.83
Bra007853.1-P	Field mustard	nucleus	11.13	33.33
Zm00001d037271_P001	Maize	cytosol	29.62	30.78
TraesCS7A01G236800.1	Wheat	cytosol	29.78	30.3
Os02t0739900-01	Rice	cytosol, mitochondrion	29.0	30.23
HORVU7Hr1G040280.1	Barley	peroxisome	29.31	30.16
EES05553	Sorghum	cytosol	29.0	30.03
Os06t0244700-01	Rice	cytosol	24.76	29.92
Zm00001d017987_P003	Maize	cytosol, mitochondrion, nucleus, plastid	28.68	29.9
Zm00001d044760_P001	Maize	cytosol	28.37	29.82
TraesCS6B01G341700.1	Wheat	mitochondrion	28.84	29.68
KXG19701	Sorghum	cytosol	28.53	29.4
GSMUA_Achr7P02250_001	Banana	cytosol	25.55	29.37
TraesCS6D01G290800.1	Wheat	mitochondrion	28.37	29.15
TraesCS6A01G311500.1	Wheat	cytosol	26.33	28.52
TraesCS7B01G103000.1	Wheat	plastid	30.09	27.2
TraesCS7D01G199100.1	Wheat	plastid	29.78	26.91
Zm00001d016462_P001	Maize	cytosol	15.67	23.58
HORVU6Hr1G076760.1	Barley	nucleus	21.79	22.56
Zm00001d017306_P002	Maize	cytosol	10.66	21.59
Zm00001d044701_P001	Maize	cytosol	15.52	20.33
Bra030470.1-P	Field mustard	cytosol	19.91	16.43
Bra026382.1-P	Field mustard	plastid	23.2	15.01

Protein Annotations

Gene3D:1.25.10.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	EnsemblPlantsGene:Bra024646	EnsemblPlants:Bra024646.1
EnsemblPlants:Bra024646.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005874	GO:GO:0008017	InterPro:HEAT
InterPro:HEAT_type_2	InterPro:IPR011989	InterPro:IPR021133	UniProt:M4E791	PFAM:PF02985	PFscan:PS50077
PANTHER:PTHR31355	PANTHER:PTHR31355:SF3	SUPFAM:SSF48371	InterPro:TORTIFOLIA1/SPIRAL2-like	UniParc:UPI0002542191	SEG:seg

Description

AT1G27210 (E=5e-210) | binding

Coordinates

chrA09:-:23830626..23832904

Molecular Weight (calculated)

68255.2 Da

IEP (calculated)

8.086

GRAVY (calculated)

-0.476

Length

638 amino acids

Sequence
(BLAST)

001: MSIHGRFPPS PPVSSSPASS SSPNSQSPSP PDLKQRVIAC LNKLADRDTL ALAAAELDSI ARSLTHDSFS SFLSCIHNTD SSCKSPVRKQ CVAVLSLMSR
101: HHGDSLSPHL AKMVSTVIRR LRDPDSSVRS ACAAATADIS AHVTAQPFTS VAKPLIETLI QEGDSNAQIG AALCLAAAVE AAADPESEQL RKSLPKIGKL
201: LKSEAFKAKA ALLSAVGSII AAGGAGTKPV LDWLVPVLIE FLSSEDWAAR KSAAEALGKV AAAEELASQY KKASTAALES RRFDKVKSVR ETMNQALSQW
301: KEVSSGLDEA LLSPSRSSTD DGGSIGCFSS VTRSSSIEVG YKSSRPKKAT PIMKRSPSLP VSRSYGTTRQ QKENLPKRNV TMLAASIVDD KKGPQFPPVK
401: QSLEDRSSES VESKEDDEAG SGGPDIIKHT ISEKSREDKK GHGFCGGLRS GSRVAPCSDD GDDSCDPVVK KCKDDVDESR KDNEELSLIR EQLAMIENQQ
501: SSLLDLLQKF MGSSQSGIQS LESRVSGLEM ALDELSCDLA VSNGRVPKSN SCGGESCSKL PGTEFLSPKF WRKTEDRPMQ TRTRNAASEM AAQENSFDQG
601: ISTDVNKVGQ RGGSSVYQKR SARNQFQDSM HTTTRLST

Best Arabidopsis Sequence Match ( AT1G27210.1 )
(BLAST)

001: MSVHGRFPAS PPISLSPSSS STSPSSQSPS TPPDLKQRVI ACLNKLADRD TLALASAELD SIARNLTHDS FSPFLNCIHN TDSSVKSPVR KQCVALLSVL
101: SRYHGDSLTP HLAKMVSTVI RRLRDPDSSV RSACAVATAD MSAHVTRQPF ASVAKPLIET LIQEGDSNLQ IGAALCLAAS VDAATDPESE QLRKSLPKIG
201: KLLKSDGFKA KAALLSAVGS IITAGGAGTK PVLDWLVPVL IEFLSSEDWA ARKSAAEALG KVATAEDLAS QYKKTCTTAL ESRRFDKVKS VRETMNRALN
301: LWKEVSTDDE ASLSPSRSST DDGNIGCFSS VTRSSTIDVG LKSARPKKVT PIMKRSPSLP VNRSYAATRQ KENLPKRNQG NMTMLVEEAS SVDNKGPHFT
401: PVKKSSEETE EKANSGGPDI IKHTISEKSR EDSKVSSFGG LRSGSRVAPC SDDGDSVKNC KDDVEESKKD SEELSLIREQ LALIENQQSS LLDLLQKFMG
501: TSQSGIQSLE SRVSGLEMAL DEISCDLAVS NGRVPRNSSG CAGDSCSKLP GTEFLSPKFW RKTEERPRNR NTANEMAAYD QGMRESTDTN NGQRGGSVFQ
601: KRSRRDQFQD CMHTTLQKPT TRLST

Arabidopsis Description

TOR1L4TORTIFOLIA1-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZH1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.