Factsheet for Zm00001d016462_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05553	Sorghum	cytosol	73.82	50.81
Zm00001d044701_P001	Maize	cytosol	57.78	50.31
Zm00001d017987_P003	Maize	cytosol, mitochondrion, nucleus, plastid	71.93	49.84
TraesCS6A01G311500.1	Wheat	cytosol	63.92	46.01
Os02t0739900-01	Rice	cytosol, mitochondrion	64.86	44.93
TraesCS6B01G341700.1	Wheat	mitochondrion	63.92	43.71
TraesCS6D01G290800.1	Wheat	mitochondrion	63.92	43.64
Zm00001d017306_P002	Maize	cytosol	28.07	37.78
Zm00001d044760_P001	Maize	cytosol	49.76	34.76
Zm00001d037271_P001	Maize	cytosol	50.0	34.53
HORVU6Hr1G076760.1	Barley	nucleus	44.81	30.84
GSMUA_Achr7P02250_001	Banana	cytosol	32.55	24.86
Zm00001d018800_P001	Maize	extracellular, mitochondrion	9.2	24.68
AT1G59850.1	Thale cress	plastid	25.0	21.29
Bra035420.1-P	Field mustard	cytosol, nucleus, plastid	22.88	21.13
CDY24496	Canola	plastid	23.11	21.12
CDY33611	Canola	cytosol, nucleus, plastid	22.41	20.79
KRH03379	Soybean	cytosol, mitochondrion	29.72	20.66
KRH57001	Soybean	cytosol	29.48	20.46
KRH63453	Soybean	cytosol	29.01	19.77
Bra007853.1-P	Field mustard	nucleus	9.91	19.72
KRH54469	Soybean	cytosol	28.07	19.1
PGSC0003DMT400063183	Potato	cytosol	27.83	19.0
VIT_17s0000g07470.t01	Wine grape	cytosol	28.54	18.97
Solyc03g113680.2.1	Tomato	nucleus	27.36	18.53
VIT_01s0026g01020.t01	Wine grape	cytosol	27.83	18.29
CDY16768	Canola	cytosol	23.58	18.18
Bra035889.1-P	Field mustard	cytosol	23.82	17.97
CDY46411	Canola	plastid	24.29	17.0
KRH74717	Soybean	plastid	26.65	16.94
CDX87253	Canola	cytosol	23.58	16.86
Bra016316.1-P	Field mustard	plastid	24.06	16.83
KRH69431	Soybean	endoplasmic reticulum, nucleus	25.94	16.74
Bra010100.1-P	Field mustard	cytosol	22.88	16.72
PGSC0003DMT400058293	Potato	extracellular	25.24	16.67
CDY56641	Canola	cytosol	22.64	16.64
CDY00306	Canola	cytosol	22.64	16.52
AT1G27210.1	Thale cress	plastid	24.06	16.32
AT5G62580.1	Thale cress	cytosol	23.58	16.26
CDY62371	Canola	plastid	19.81	16.22
Solyc05g006550.2.1	Tomato	cytosol	25.24	16.11
Bra024646.1-P	Field mustard	plastid	23.58	15.67
CDY16232	Canola	plastid	23.11	15.56
CDY14680	Canola	cytosol, plastid	23.11	13.84
Zm00001d013733_P002	Maize	mitochondrion	8.73	12.8
Zm00001d021378_P007	Maize	cytosol	23.11	11.56
CDX68449	Canola	cytosol	1.65	9.46
Zm00001d021641_P002	Maize	plastid	20.52	9.39
Zm00001d006504_P005	Maize	plastid	19.58	8.93

Protein Annotations

Gene3D:1.25.10.10	MapMan:35.1	UniProt:A0A1D6H7Y0	ProteinID:AQK70856.1	InterPro:ARM-like	InterPro:ARM-type_fold
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0005874	GO:GO:0008017	InterPro:IPR011989	PANTHER:PTHR31355	PANTHER:PTHR31355:SF16
SUPFAM:SSF48371	InterPro:TORTIFOLIA1/SPIRAL2-like	UniParc:UPI0008427D9E	EnsemblPlantsGene:Zm00001d016462	EnsemblPlants:Zm00001d016462_P001	EnsemblPlants:Zm00001d016462_T001
SEG:seg	:	:	:	:	:

Description

ARM repeat superfamily protein

Coordinates

chr5:-:163210940..163213928

Molecular Weight (calculated)

46429.7 Da

IEP (calculated)

9.019

GRAVY (calculated)

-0.173

Length

424 amino acids

Sequence
(BLAST)

001: MTRISPFPCR VTHADLSIPI ARTLEPDDLL AFVHAVSDAR HTDKSPLRRH TLCALALVAA SHPRDVVAPL VPRILAAALR RVRDQDSSIR AALVDTTCAA
101: AAASASAALR PLTDALLHEP DDLLKLLRSN AFKAKPALIT LIGACAAMGI DVEVTASITC LRDAIASDDW AARKAAAEAL VALALEHTDL LTTYKSSCVT
201: FFEARRFDKV KVVRESMNRM IEVWKEISGA EEDECSSALP PASQSQRRPS LTATRKSILS VSKSSLPDVS TSVTKTNSPS SIRNKKLSPP SYHKVRQANN
301: CDYKVDIVVS LDATPIKVVM EEKLLKGRGV RDRLESRRTL FKGSEDRSTK LAAHKAGSRV VPYEGGGNLE EISEVEGGSE RCSFIFEYFS NFKNKNYRQP
401: ITLPGTEQIR NWGCGRFFLI SCEL

Best Arabidopsis Sequence Match ( AT1G27210.1 )
(BLAST)

001: MSVHGRFPAS PPISLSPSSS STSPSSQSPS TPPDLKQRVI ACLNKLADRD TLALASAELD SIARNLTHDS FSPFLNCIHN TDSSVKSPVR KQCVALLSVL
101: SRYHGDSLTP HLAKMVSTVI RRLRDPDSSV RSACAVATAD MSAHVTRQPF ASVAKPLIET LIQEGDSNLQ IGAALCLAAS VDAATDPESE QLRKSLPKIG
201: KLLKSDGFKA KAALLSAVGS IITAGGAGTK PVLDWLVPVL IEFLSSEDWA ARKSAAEALG KVATAEDLAS QYKKTCTTAL ESRRFDKVKS VRETMNRALN
301: LWKEVSTDDE ASLSPSRSST DDGNIGCFSS VTRSSTIDVG LKSARPKKVT PIMKRSPSLP VNRSYAATRQ KENLPKRNQG NMTMLVEEAS SVDNKGPHFT
401: PVKKSSEETE EKANSGGPDI IKHTISEKSR EDSKVSSFGG LRSGSRVAPC SDDGDSVKNC KDDVEESKKD SEELSLIREQ LALIENQQSS LLDLLQKFMG
501: TSQSGIQSLE SRVSGLEMAL DEISCDLAVS NGRVPRNSSG CAGDSCSKLP GTEFLSPKFW RKTEERPRNR NTANEMAAYD QGMRESTDTN NGQRGGSVFQ
601: KRSRRDQFQD CMHTTLQKPT TRLST

Arabidopsis Description

TOR1L4TORTIFOLIA1-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZH1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.