Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G27210.1 | CDX67865 | AT3G61790.1 | 21798944 |
| AT1G27210.1 | CDX89132 | AT3G61790.1 | 21798944 |
| AT1G27210.1 | CDY25077 | AT3G61790.1 | 21798944 |
| AT1G27210.1 | CDY43950 | AT3G61790.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY62371 | Canola | plastid | 62.16 | 8.88 |
| CDY46411 | Canola | plastid | 62.16 | 7.59 |
| CDY16232 | Canola | plastid | 63.51 | 7.46 |
| AT1G27210.1 | Thale cress | plastid | 62.16 | 7.36 |
| Os06t0244700-01 | Rice | cytosol | 51.35 | 7.2 |
| GSMUA_Achr7P02250_001 | Banana | cytosol | 52.7 | 7.03 |
| CDY16768 | Canola | cytosol | 51.35 | 6.91 |
| Zm00001d017987_P003 | Maize | cytosol, mitochondrion, nucleus, plastid | 55.41 | 6.7 |
| EES05553 | Sorghum | cytosol | 55.41 | 6.66 |
| CDY14680 | Canola | cytosol, plastid | 63.51 | 6.64 |
| TraesCS6A01G311500.1 | Wheat | cytosol | 50.0 | 6.28 |
| HORVU7Hr1G040280.1 | Barley | peroxisome | 51.35 | 6.13 |
| CDY56641 | Canola | cytosol | 47.3 | 6.07 |
| TraesCS7A01G236800.1 | Wheat | cytosol | 51.35 | 6.06 |
| Os02t0739900-01 | Rice | cytosol, mitochondrion | 50.0 | 6.05 |
| Zm00001d037271_P001 | Maize | cytosol | 50.0 | 6.03 |
| HORVU6Hr1G076760.1 | Barley | nucleus | 50.0 | 6.01 |
| KRH74717 | Soybean | plastid | 54.05 | 6.0 |
| TraesCS6B01G341700.1 | Wheat | mitochondrion | 50.0 | 5.97 |
| TraesCS6D01G290800.1 | Wheat | mitochondrion | 50.0 | 5.96 |
| Zm00001d044760_P001 | Maize | cytosol | 48.65 | 5.93 |
| CDY00306 | Canola | cytosol | 45.95 | 5.85 |
| KXG19701 | Sorghum | cytosol | 48.65 | 5.82 |
| VIT_01s0026g01020.t01 | Wine grape | cytosol | 50.0 | 5.74 |
| KRH69431 | Soybean | endoplasmic reticulum, nucleus | 50.0 | 5.63 |
| CDX87253 | Canola | cytosol | 44.59 | 5.56 |
| PGSC0003DMT400058293 | Potato | extracellular | 47.3 | 5.45 |
| TraesCS7B01G103000.1 | Wheat | plastid | 51.35 | 5.38 |
| TraesCS7D01G199100.1 | Wheat | plastid | 51.35 | 5.38 |
| CDY24496 | Canola | plastid | 31.08 | 4.96 |
| Solyc05g006550.2.1 | Tomato | cytosol | 43.24 | 4.82 |
| CDY33611 | Canola | cytosol, nucleus, plastid | 29.73 | 4.81 |
| CDY29609 | Canola | cytosol | 25.68 | 2.46 |
| CDY38410 | Canola | nucleus | 25.68 | 2.42 |
| CDY07335 | Canola | cytosol | 27.03 | 2.41 |
| CDY29271 | Canola | plastid | 22.97 | 1.97 |
| CDX78782 | Canola | nucleus | 21.62 | 1.91 |
| CDX89282 | Canola | plastid | 22.97 | 1.79 |
| Zm00001d016462_P001 | Maize | cytosol | 9.46 | 1.65 |
| Zm00001d017306_P002 | Maize | cytosol | 5.41 | 1.27 |
| Zm00001d044701_P001 | Maize | cytosol | 5.41 | 0.82 |
Protein Annotations
| EnsemblPlants:CDX68449 | EnsemblPlantsGene:GSBRNA2T00125886001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005856 | GO:GO:0005874 | GO:GO:0008017 | InterPro:TORTIFOLIA1/SPIRAL2-like |
| ncoils:Coil | PANTHER:PTHR31355 | PANTHER:PTHR31355:SF3 | ProteinID:CDX68449 | ProteinID:CDX68449.1 | UniParc:UPI0004EBD9EE |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC01g25270D
Coordinates
chrLK031788:-:1643693..1644222
Molecular Weight (calculated)
8065.8 Da
IEP (calculated)
4.686
GRAVY (calculated)
-0.019
Length
74 amino acids
Sequence
(BLAST)
(BLAST)
1: MIENQQSSLL DLLQKFILDV EIHGKLTDGI QSLESRVSGL EMALDELSCD LAVSIGRVRK NSSCGGESCS KLRV
001: MSVHGRFPAS PPISLSPSSS STSPSSQSPS TPPDLKQRVI ACLNKLADRD TLALASAELD SIARNLTHDS FSPFLNCIHN TDSSVKSPVR KQCVALLSVL
101: SRYHGDSLTP HLAKMVSTVI RRLRDPDSSV RSACAVATAD MSAHVTRQPF ASVAKPLIET LIQEGDSNLQ IGAALCLAAS VDAATDPESE QLRKSLPKIG
201: KLLKSDGFKA KAALLSAVGS IITAGGAGTK PVLDWLVPVL IEFLSSEDWA ARKSAAEALG KVATAEDLAS QYKKTCTTAL ESRRFDKVKS VRETMNRALN
301: LWKEVSTDDE ASLSPSRSST DDGNIGCFSS VTRSSTIDVG LKSARPKKVT PIMKRSPSLP VNRSYAATRQ KENLPKRNQG NMTMLVEEAS SVDNKGPHFT
401: PVKKSSEETE EKANSGGPDI IKHTISEKSR EDSKVSSFGG LRSGSRVAPC SDDGDSVKNC KDDVEESKKD SEELSLIREQ LALIENQQSS LLDLLQKFMG
501: TSQSGIQSLE SRVSGLEMAL DEISCDLAVS NGRVPRNSSG CAGDSCSKLP GTEFLSPKFW RKTEERPRNR NTANEMAAYD QGMRESTDTN NGQRGGSVFQ
601: KRSRRDQFQD CMHTTLQKPT TRLST
101: SRYHGDSLTP HLAKMVSTVI RRLRDPDSSV RSACAVATAD MSAHVTRQPF ASVAKPLIET LIQEGDSNLQ IGAALCLAAS VDAATDPESE QLRKSLPKIG
201: KLLKSDGFKA KAALLSAVGS IITAGGAGTK PVLDWLVPVL IEFLSSEDWA ARKSAAEALG KVATAEDLAS QYKKTCTTAL ESRRFDKVKS VRETMNRALN
301: LWKEVSTDDE ASLSPSRSST DDGNIGCFSS VTRSSTIDVG LKSARPKKVT PIMKRSPSLP VNRSYAATRQ KENLPKRNQG NMTMLVEEAS SVDNKGPHFT
401: PVKKSSEETE EKANSGGPDI IKHTISEKSR EDSKVSSFGG LRSGSRVAPC SDDGDSVKNC KDDVEESKKD SEELSLIREQ LALIENQQSS LLDLLQKFMG
501: TSQSGIQSLE SRVSGLEMAL DEISCDLAVS NGRVPRNSSG CAGDSCSKLP GTEFLSPKFW RKTEERPRNR NTANEMAAYD QGMRESTDTN NGQRGGSVFQ
601: KRSRRDQFQD CMHTTLQKPT TRLST
Arabidopsis Description
TOR1L4TORTIFOLIA1-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZH1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.