Factsheet for PGSC0003DMT400058293

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

extracellular: 28961394

msms PMID: 28961394 doi

E Elagamey, A Sinha, K Narula, MAE Abdellatef, N Chakraborty, S Chakraborty

National Institute of Plant Genome Research, New Delhi, India., Plant Pathology Research Institute, Agricultural Research Center (ARC), Giza, Egypt.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g006550.2.1	Tomato	cytosol	82.55	79.82
CDX68449	Canola	cytosol	5.45	47.3
VIT_01s0026g01020.t01	Wine grape	cytosol	45.95	45.74
Bra035420.1-P	Field mustard	cytosol, nucleus, plastid	29.59	41.39
CDY33611	Canola	cytosol, nucleus, plastid	29.13	40.92
CDY24496	Canola	plastid	29.44	40.73
AT1G59850.1	Thale cress	plastid	30.84	39.76
PGSC0003DMT400063183	Potato	cytosol	37.85	39.13
KRH74717	Soybean	plastid	40.5	38.98
CDY46411	Canola	plastid	35.98	38.12
CDY16232	Canola	plastid	37.38	38.1
KRH69431	Soybean	endoplasmic reticulum, nucleus	38.78	37.9
Bra024646.1-P	Field mustard	plastid	37.23	37.46
Bra016316.1-P	Field mustard	plastid	35.36	37.46
CDY62371	Canola	plastid	30.22	37.45
AT1G27210.1	Thale cress	plastid	35.98	36.96
CDY14680	Canola	cytosol, plastid	37.07	33.62
GSMUA_Achr7P02250_001	Banana	cytosol	26.17	30.27
TraesCS7A01G236800.1	Wheat	cytosol	29.44	30.14
Zm00001d037271_P001	Maize	cytosol	28.66	29.97
Os02t0739900-01	Rice	cytosol, mitochondrion	28.5	29.9
EES05553	Sorghum	cytosol	28.35	29.55
Bra007853.1-P	Field mustard	nucleus	9.66	29.11
Zm00001d017987_P003	Maize	cytosol, mitochondrion, nucleus, plastid	27.73	29.09
HORVU7Hr1G040280.1	Barley	peroxisome	28.04	29.03
KXG19701	Sorghum	cytosol	27.57	28.59
TraesCS6B01G341700.1	Wheat	mitochondrion	27.57	28.55
Zm00001d044760_P001	Maize	cytosol	26.79	28.34
TraesCS6D01G290800.1	Wheat	mitochondrion	27.26	28.18
Os06t0244700-01	Rice	cytosol	22.74	27.65
TraesCS6A01G311500.1	Wheat	cytosol	24.92	27.16
TraesCS7B01G103000.1	Wheat	plastid	29.59	26.91
TraesCS7D01G199100.1	Wheat	plastid	29.28	26.63
Zm00001d016462_P001	Maize	cytosol	16.67	25.24
Zm00001d017306_P002	Maize	cytosol	10.9	22.22
HORVU6Hr1G076760.1	Barley	nucleus	20.72	21.59
Zm00001d044701_P001	Maize	cytosol	16.2	21.36
PGSC0003DMT400035319	Potato	nucleus	24.61	19.9
PGSC0003DMT400037390	Potato	plastid	24.45	18.21

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:102585302	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Cohesin_HEAT
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005856	GO:GO:0005874	GO:GO:0008017	InterPro:HEAT	InterPro:HEAT_type_2
InterPro:IPR011989	InterPro:IPR021133	UniProt:M1C2F7	PFAM:PF02985	PFAM:PF12765	EnsemblPlantsGene:PGSC0003DMG400022634
PGSC:PGSC0003DMG400022634	EnsemblPlants:PGSC0003DMT400058293	PFscan:PS50077	PANTHER:PTHR31355	PANTHER:PTHR31355:SF3	SUPFAM:SSF48371
InterPro:TORTIFOLIA1/SPIRAL2-like	UniParc:UPI000294B7DB	RefSeq:XP_006357221.1	RefSeq:XP_015168827.1	SEG:seg	:

Description

Microtubule-associated protein TORTIFOLIA1 [Source:PGSC_GENE;Acc:PGSC0003DMG400022634]

Coordinates

chr5:-:6593035..6597489

Molecular Weight (calculated)

70347.9 Da

IEP (calculated)

8.484

GRAVY (calculated)

-0.465

Length

642 amino acids

Sequence
(BLAST)

001: MALQRQPSDL KNRVNTCLNR LSDRDTLTVA TNELESIARS LNSEGFGAFL TCISSTDSSD KSPVRRQCVR LIGVLSASHG DALSPHLTKM LSTVLRRLRD
101: PDSAVRSACV EAVSSIASEI TQPPFSSILK PLIDAIMHEQ DNNSQIGASL CLAAAIEASP DPEPAELKKM LSKLMKLVKN DSFKAKPALL SLISSIVSVG
201: GASNKNVLNS LVPITAELLS SEDWTVRKAA AETLGRLAVS EKELLSELKA FCITSLDSRR FDKVKVVRET MNRALEWWKE VPGASDDVLP QLQSKFPQKD
301: CVSGACSPTP SKSSSDTATE TPQPKKAIRS TKSLASSSSS SITSQKNSSI RFRRTKSNVT SSCKLDFRKS PDAKAKHTVS QASLLEVACE EQKSQNLRVQ
401: GSVDSVSCSS SNSEVKSTLF NRPPDQKFHR YGNSQFGSRV IPLFEDMDVP DDNINEDALL SHREYENFCS VSKQLVQIEN QQSSLLDLLQ GFIGSSRHGM
501: NSLEKRVNGL ERLLDEMQYD LAITTGRISD TDFTGSTCGM IPRAEFLGPK FWRSPEGQNS QSRISFSTGS QDVVYSQPET DAAKQNKNIS SAKQFSINQN
601: EALRSFSGRR KERTARDGET AGFCHVSRLN GTSFTNCIQQ QT

Best Arabidopsis Sequence Match ( AT1G27210.1 )
(BLAST)

001: MSVHGRFPAS PPISLSPSSS STSPSSQSPS TPPDLKQRVI ACLNKLADRD TLALASAELD SIARNLTHDS FSPFLNCIHN TDSSVKSPVR KQCVALLSVL
101: SRYHGDSLTP HLAKMVSTVI RRLRDPDSSV RSACAVATAD MSAHVTRQPF ASVAKPLIET LIQEGDSNLQ IGAALCLAAS VDAATDPESE QLRKSLPKIG
201: KLLKSDGFKA KAALLSAVGS IITAGGAGTK PVLDWLVPVL IEFLSSEDWA ARKSAAEALG KVATAEDLAS QYKKTCTTAL ESRRFDKVKS VRETMNRALN
301: LWKEVSTDDE ASLSPSRSST DDGNIGCFSS VTRSSTIDVG LKSARPKKVT PIMKRSPSLP VNRSYAATRQ KENLPKRNQG NMTMLVEEAS SVDNKGPHFT
401: PVKKSSEETE EKANSGGPDI IKHTISEKSR EDSKVSSFGG LRSGSRVAPC SDDGDSVKNC KDDVEESKKD SEELSLIREQ LALIENQQSS LLDLLQKFMG
501: TSQSGIQSLE SRVSGLEMAL DEISCDLAVS NGRVPRNSSG CAGDSCSKLP GTEFLSPKFW RKTEERPRNR NTANEMAAYD QGMRESTDTN NGQRGGSVFQ
601: KRSRRDQFQD CMHTTLQKPT TRLST

Arabidopsis Description

TOR1L4TORTIFOLIA1-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZH1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.