Factsheet for Zm00001d044701_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016462_P001	Maize	cytosol	50.31	57.78
EES05553	Sorghum	cytosol	57.29	45.29
Zm00001d017987_P003	Maize	cytosol, mitochondrion, nucleus, plastid	56.47	44.93
TraesCS6A01G311500.1	Wheat	cytosol	50.31	41.6
Zm00001d017306_P002	Maize	cytosol	25.87	40.0
Os02t0739900-01	Rice	cytosol, mitochondrion	50.1	39.87
TraesCS6B01G341700.1	Wheat	mitochondrion	50.1	39.35
TraesCS6D01G290800.1	Wheat	mitochondrion	49.69	38.97
Zm00001d037271_P001	Maize	cytosol	40.66	32.25
Zm00001d044760_P001	Maize	cytosol	40.04	32.13
HORVU6Hr1G076760.1	Barley	nucleus	39.43	31.17
Zm00001d018800_P001	Maize	extracellular, mitochondrion	8.42	25.95
AT1G59850.1	Thale cress	plastid	20.94	20.48
Bra035420.1-P	Field mustard	cytosol, nucleus, plastid	19.3	20.48
GSMUA_Achr7P02250_001	Banana	cytosol	23.2	20.36
KRH03379	Soybean	cytosol, mitochondrion	25.26	20.16
CDY33611	Canola	cytosol, nucleus, plastid	18.89	20.13
CDY24496	Canola	plastid	19.1	20.04
KRH57001	Soybean	cytosol	24.85	19.8
KRH54469	Soybean	cytosol	25.05	19.58
KRH63453	Soybean	cytosol	24.64	19.29
CDY16768	Canola	cytosol	21.36	18.91
Bra035889.1-P	Field mustard	cytosol	21.56	18.68
PGSC0003DMT400063183	Potato	cytosol	23.0	18.04
VIT_17s0000g07470.t01	Wine grape	cytosol	23.61	18.03
CDX87253	Canola	cytosol	21.36	17.54
Solyc03g113680.2.1	Tomato	nucleus	22.38	17.41
VIT_01s0026g01020.t01	Wine grape	cytosol	22.79	17.21
CDY56641	Canola	cytosol	20.33	17.16
KRH69431	Soybean	endoplasmic reticulum, nucleus	23.0	17.05
Bra010100.1-P	Field mustard	cytosol	20.12	16.9
CDY00306	Canola	cytosol	20.12	16.87
KRH74717	Soybean	plastid	23.0	16.79
AT5G62580.1	Thale cress	cytosol	20.94	16.59
PGSC0003DMT400058293	Potato	extracellular	21.36	16.2
AT1G27210.1	Thale cress	plastid	20.53	16.0
Bra016316.1-P	Field mustard	plastid	19.51	15.68
Solyc05g006550.2.1	Tomato	cytosol	21.36	15.66
CDY16232	Canola	plastid	20.12	15.56
Bra024646.1-P	Field mustard	plastid	20.33	15.52
CDY46411	Canola	plastid	19.1	15.35
CDY62371	Canola	plastid	16.02	15.06
CDY14680	Canola	cytosol, plastid	20.33	13.98
Bra007853.1-P	Field mustard	nucleus	5.95	13.62
Zm00001d013733_P002	Maize	mitochondrion	7.8	13.15
Zm00001d021378_P007	Maize	cytosol	20.12	11.56
Zm00001d021641_P002	Maize	plastid	19.51	10.25
Zm00001d006504_P005	Maize	plastid	18.28	9.58
CDX68449	Canola	cytosol	0.82	5.41

Protein Annotations

Gene3D:1.25.10.10	MapMan:35.1	UniProt:A0A1D6NQU0	InterPro:AB_hydrolase_3	InterPro:ARM-like	InterPro:ARM-type_fold
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005856	GO:GO:0005874	GO:GO:0008017	GO:GO:0008150	GO:GO:0008152
GO:GO:0016787	InterPro:IPR011989	ProteinID:ONM42296.1	PFAM:PF07859	PANTHER:PTHR31355	PANTHER:PTHR31355:SF16
SUPFAM:SSF48371	InterPro:TORTIFOLIA1/SPIRAL2-like	UniParc:UPI0008454853	EnsemblPlantsGene:Zm00001d044701	EnsemblPlants:Zm00001d044701_P001	EnsemblPlants:Zm00001d044701_T001
SEG:seg	:	:	:	:	:

Description

ARM repeat superfamily protein

Coordinates

chr3:+:235255541..235259219

Molecular Weight (calculated)

52902.4 Da

IEP (calculated)

8.865

GRAVY (calculated)

-0.211

Length

487 amino acids

Sequence
(BLAST)

001: MAHNVAIRLR KEGGIEGYDD MGKELLGAEP TDPGYRAIFD PTWEFICGGK FGLDHHYVNP MASPEELRQL GTRRALVTMA DQCWFVERAR AYSEGIKKCG
101: SEEELELYET KGEAPVFFLP KHDNEKAVKE LALCYDQKSP LRCHALCALA LIAASHPRDV VAPLVPRILA AALCRVRDQD SSVRTAAVAS ASTSAVLRPL
201: TDALLHEQDQ CAQLAAALAM AAAVEASAVT VDLASYLHRL QPRLLKLLRS NAFKAKPAHI TLIGACATMG ADVEVTASIS CLRDAIASDD WATRKAAAEA
301: LAALALEHTD LLTTYKSSCV TFFKARRFDK VKVVRESINR MIEAWKEIPG SASDGRYPAA SLGSNSVPSA TRKSILSVSR SSSPDVSTSV TKTNSPSSIR
401: NKKLSPPSYH KVRQANNCDY KVNIVVSPDA TPIKVVTEEK LLKGRGVRDR LESRRTLFKG SEDRSAKLAA HKAGSRVVLY EGGGNLE

Best Arabidopsis Sequence Match ( AT5G62580.1 )
(BLAST)

001: MATKNSKQNM SVLLTKLGDR DTFTMAAREL DLMARQIDPS SSSGNLQSFI SVILSVDTGD KPAVRKHCIH LLAVLSVSLP LNSLSPFLSK ILTRITRRLR
101: DPDSSIRSTC VAAVSAISSR TTKPPFYSAF MKPLADTLFT EQEVNAQIGA ALCLAAAIDS ASDPDPVRLG QTLLPRLEKL VKCNAFKAKS AGVVVIGSVI
201: GAGGLSGTSV SSGGLKGLVD CLLSFLVSED WAARKAAAEA LGRLATMERN ELGEFKAKCL KIFESRKYDK VKAVREVMNQ MMEAWKQVPD LSEEVSPPRS
301: NASSKGDASD GRYPSGSRVG STPAKSRTHL VNRSTPPGSS LATTARKQAN RKSIDQKKTS LTASLTKPNV RRRLEWKAGG ASIPTGVSLE DEQHCDHDEN
401: AKETSHSSHN TVQKLGGVSS SLNGNIPPSG ATMVTGHHVL SENPNSNNCK GLEDISLIRN QLVQIEQQQA NLMDLLQRFV GSSQHGMRGL ETRVHGLELA
501: LDEISYDLAV SNGRMSNGSS RNNCCLLPSG SFIKSKFWKK HDSKYSASRM STYRNRNAET TEIQNSRHRF NGSPGFIVNP LAEIRPDNDL QVCLTIEGRR
601: ETKPSKASET LKTTV

Arabidopsis Description

TOR1L3TORTIFOLIA1-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q6NPR6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.