CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67865
CDX89132
CDY25077
CDY43950

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27210.1	CDX67865	AT3G61790.1	21798944
AT1G27210.1	CDX89132	AT3G61790.1	21798944
AT1G27210.1	CDY25077	AT3G61790.1	21798944
AT1G27210.1	CDY43950	AT3G61790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46411	Canola	plastid	80.69	68.98
CDX68449	Canola	cytosol	8.88	62.16
CDY16232	Canola	plastid	72.39	59.52
AT1G27210.1	Thale cress	plastid	63.9	52.96
CDY14680	Canola	cytosol, plastid	68.15	49.86
CDY33611	Canola	cytosol, nucleus, plastid	37.45	42.45
CDY24496	Canola	plastid	36.87	41.16
KRH74717	Soybean	plastid	45.75	35.53
KRH69431	Soybean	endoplasmic reticulum, nucleus	43.82	34.55
VIT_01s0026g01020.t01	Wine grape	cytosol	42.28	33.95
CDY16768	Canola	cytosol	34.56	32.55
PGSC0003DMT400058293	Potato	extracellular	37.45	30.22
CDY56641	Canola	cytosol	33.2	29.81
CDY00306	Canola	cytosol	33.2	29.6
CDX87253	Canola	cytosol	33.4	29.17
Solyc05g006550.2.1	Tomato	cytosol	37.26	29.07
GSMUA_Achr7P02250_001	Banana	cytosol	30.89	28.83
Zm00001d017987_P003	Maize	cytosol, mitochondrion, nucleus, plastid	31.27	26.47
EES05553	Sorghum	cytosol	31.47	26.46
Os02t0739900-01	Rice	cytosol, mitochondrion	30.89	26.14
TraesCS6B01G341700.1	Wheat	mitochondrion	31.27	26.13
TraesCS6D01G290800.1	Wheat	mitochondrion	31.27	26.09
Zm00001d044760_P001	Maize	cytosol	30.31	25.86
TraesCS7A01G236800.1	Wheat	cytosol	31.27	25.84
Zm00001d037271_P001	Maize	cytosol	30.5	25.73
Os06t0244700-01	Rice	cytosol	25.87	25.38
HORVU7Hr1G040280.1	Barley	peroxisome	30.31	25.32
TraesCS6A01G311500.1	Wheat	cytosol	28.57	25.13
KXG19701	Sorghum	cytosol	29.92	25.04
TraesCS7B01G103000.1	Wheat	plastid	31.47	23.09
TraesCS7D01G199100.1	Wheat	plastid	31.27	22.95
Zm00001d016462_P001	Maize	cytosol	16.22	19.81
HORVU6Hr1G076760.1	Barley	nucleus	22.78	19.16
Zm00001d017306_P002	Maize	cytosol	9.85	16.19
Zm00001d044701_P001	Maize	cytosol	15.06	16.02
CDY38410	Canola	nucleus	23.55	15.54
CDY29271	Canola	plastid	23.94	14.4
CDX78782	Canola	nucleus	23.17	14.34
CDY29609	Canola	cytosol	20.85	13.97
CDX89282	Canola	plastid	24.32	13.25
CDY07335	Canola	cytosol	19.5	12.18

Protein Annotations

Gene3D:1.25.10.10	MapMan:35.1	UniProt:A0A078JCJ6	InterPro:ARM-like	InterPro:ARM-type_fold	EnsemblPlants:CDY62371
ProteinID:CDY62371	ProteinID:CDY62371.1	InterPro:Cohesin_HEAT	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005874
GO:GO:0008017	EnsemblPlantsGene:GSBRNA2T00036207001	InterPro:IPR011989	PFAM:PF12765	PANTHER:PTHR31355	PANTHER:PTHR31355:SF3
SUPFAM:SSF48371	InterPro:TORTIFOLIA1/SPIRAL2-like	UniParc:UPI0004EF3270	SEG:seg	:	:

Description

BnaAnng18180DBnaAnng18180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JCJ6]

Coordinates

chrLK034133:-:34268..36261

Molecular Weight (calculated)

56057.6 Da

IEP (calculated)

6.930

GRAVY (calculated)

-0.541

Length

518 amino acids

Sequence
(BLAST)

001: MSLHGRFPAS PPVSLSPASS SSPSSHSPSS PDLKQRVIAC LNKLADRDTL ALAAAELDSI ARNLTHDSFS SFLSCIHTTD SSSKSPVRKH SVAVLSLMSR
101: HHGESLSPHL SKMVSTIIRR LRDPDSSVRS ACAAATADIS AHVTRQPFAS VAKPLIETLI QEGDSNVQTG AAVCLAASVE AAADPEPEQL RNSEDWAARK
201: SAAEGLSRVA AAEEELAWEY KKACTAALES RRFDKVKSVR ETMNRALSQW KEVANDVDEA LLSPCTSSLD VGVKSSRLKK STRMIKRSPS LPVNRSYVAS
301: RQQKENLPRR NVTVSVASRE EEQVKSGGPD IIKHTISEKG REDKKVGGFD CGLRSGSRVA PCSDDGDDSC DSLVKNGKDG VDESRKDSEE LSLIREQLAM
401: IENQQSSLLD LLRKFMGSSQ SGIQSLESRV SGLEMALDEI SCDLAVSNGR VPKTSSCGGE SCSKLPGAEF LSHKYWRKAE ERPMQTRSTA SETAAHENSF
501: DQGMQKRGEE SDAEIEVK

Best Arabidopsis Sequence Match ( AT1G27210.1 )
(BLAST)

001: MSVHGRFPAS PPISLSPSSS STSPSSQSPS TPPDLKQRVI ACLNKLADRD TLALASAELD SIARNLTHDS FSPFLNCIHN TDSSVKSPVR KQCVALLSVL
101: SRYHGDSLTP HLAKMVSTVI RRLRDPDSSV RSACAVATAD MSAHVTRQPF ASVAKPLIET LIQEGDSNLQ IGAALCLAAS VDAATDPESE QLRKSLPKIG
201: KLLKSDGFKA KAALLSAVGS IITAGGAGTK PVLDWLVPVL IEFLSSEDWA ARKSAAEALG KVATAEDLAS QYKKTCTTAL ESRRFDKVKS VRETMNRALN
301: LWKEVSTDDE ASLSPSRSST DDGNIGCFSS VTRSSTIDVG LKSARPKKVT PIMKRSPSLP VNRSYAATRQ KENLPKRNQG NMTMLVEEAS SVDNKGPHFT
401: PVKKSSEETE EKANSGGPDI IKHTISEKSR EDSKVSSFGG LRSGSRVAPC SDDGDSVKNC KDDVEESKKD SEELSLIREQ LALIENQQSS LLDLLQKFMG
501: TSQSGIQSLE SRVSGLEMAL DEISCDLAVS NGRVPRNSSG CAGDSCSKLP GTEFLSPKFW RKTEERPRNR NTANEMAAYD QGMRESTDTN NGQRGGSVFQ
601: KRSRRDQFQD CMHTTLQKPT TRLST

Arabidopsis Description

TOR1L4TORTIFOLIA1-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZH1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.