CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030470.1-P	Field mustard	cytosol	97.41	97.41
CDY07335	Canola	cytosol	85.12	79.37
AT1G50890.1	Thale cress	plastid	78.91	74.3
CDY29271	Canola	plastid	52.91	47.5
Solyc10g006350.2.1	Tomato	plastid	51.62	46.18
KRG98830	Soybean	plastid	54.72	45.83
KRH46114	Soybean	plastid	54.85	45.79
PGSC0003DMT400037390	Potato	plastid	50.97	45.71
VIT_19s0090g00020.t01	Wine grape	plastid	55.37	45.63
GSMUA_Achr9P02790_001	Banana	plastid	41.79	43.12
CDX89282	Canola	plastid	52.65	42.8
GSMUA_Achr9P11640_001	Banana	cytosol	47.22	42.39
HORVU2Hr1G046160.2	Barley	cytosol, plastid	34.15	37.88
Os07t0520400-01	Rice	cytosol, mitochondrion, nucleus, plastid	42.82	36.98
TraesCS2B01G246900.8	Wheat	plastid	41.91	36.69
TraesCS2D01G226900.1	Wheat	plastid	41.79	36.5
TraesCS2A01G221200.6	Wheat	plastid	41.79	36.5
EER99458	Sorghum	plastid	42.95	36.01
Zm00001d021641_P002	Maize	plastid	41.91	34.95
Zm00001d006504_P005	Maize	plastid	38.81	32.29
CDY33611	Canola	cytosol, nucleus, plastid	16.3	27.57
CDY24496	Canola	plastid	16.3	27.16
CDX68449	Canola	cytosol	2.46	25.68
CDY46411	Canola	plastid	17.85	22.77
CDY38410	Canola	nucleus	22.12	21.78
CDX78782	Canola	nucleus	23.54	21.74
CDY62371	Canola	plastid	13.97	20.85
CDY16232	Canola	plastid	16.69	20.48
CDY16768	Canola	cytosol	14.49	20.36
CDY14680	Canola	cytosol, plastid	17.85	19.49
CDX87253	Canola	cytosol	14.88	19.39
CDY56641	Canola	cytosol	14.23	19.06
CDY00306	Canola	cytosol	14.23	18.93

Protein Annotations

Gene3D:1.25.10.10	MapMan:20.1.5.3	UniProt:A0A078GWU3	InterPro:ARM-like	InterPro:ARM-type_fold	EnsemblPlants:CDY29609
ProteinID:CDY29609	ProteinID:CDY29609.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005874	GO:GO:0008017
EnsemblPlantsGene:GSBRNA2T00043350001	InterPro:IPR011989	PANTHER:PTHR31355	PANTHER:PTHR31355:SF7	SUPFAM:SSF48371	InterPro:TORTIFOLIA1/SPIRAL2-like
UniParc:UPI0004EF1DA1	SEG:seg	:	:	:	:

Description

BnaA05g15610DBnaA05g15610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GWU3]

Coordinates

chrLK032240:-:239576..244087

Molecular Weight (calculated)

84704.0 Da

IEP (calculated)

4.947

GRAVY (calculated)

-0.407

Length

773 amino acids

Sequence
(BLAST)

001: MKPSFPFRSS SHSAMVEQKQ RILTSLSRIG DRDTYQIAVD DLEKLVLSVS DSPETLPVLL HCLFDSSADP KPPVKRESTR LLSFLCLTYS DLTSSQLARI
101: ISHIVKRLKD ADNGVRDACR DAIGSLSERF LTEGGAPMVG LFAKPLFEAM AEQNKSLQSG AAICMGKMVD SATEPPVAAF QKLCPRISKL LNSPNYLTKA
201: SLLPLVGSLS QVGAIAPQSL ESLLHSIHEC LRCTDWVTRK AASDVLIALA VHSTSLVADK TDSTLTALEA CRFDKIKPVR ESLSEALNVW KNIAGKGESG
301: TSVDQKDVAS EQCMLETNGE TDPVMQGSSD DLSSNSDSIS KAVLILRKKA PRLTGKDLNP EFFQKLEKGG SGDMPVEVIL PSRQKNSSNS NTEDESDANA
401: SVSRSRPKGL CGIAGAHPKQ RHFGDFARAF EADETEVIQA EASESRGNWP PLQRQLLHLE RQQTHIMNML QDFMGGSHDG MRSLENRVRG LERIVEEMSR
501: EMSTQSGARG KVAAPWRSDV DGWDGPSYAS SRNAQTSSRK TLGTGPMDSE HSGNSRRAWD KSSVQIRLGE GPSARSVWQA SKDEATLEAI RVAGEDGGGT
601: SRTRRVSIPQ AEAIMEDDDD DDRRGQERDP VWTCWSNAMH ALRVGDTDSA FAEVLSTGDD LLLVKLMDKT GPVLDQLSCD IGNEVLNSIA QFLPDHTLFD
701: VCLSWIQQLL EVSVENGPDF MGIPLELKKE ILLNLHEASL TMDPPEDWEG LAPDHLLLQL ASNWNIELQH FDQ

Best Arabidopsis Sequence Match ( AT1G50890.1 )
(BLAST)

001: MRSQTASKTS MKPSSNSSAF SVRSSVAVSS HSAMVELKQR ILTSLSRLGD RDTYQIAVDD LEKIVVSVPD SPEILPVLLH CLFDSSSDLK APVKRESIRL
101: LSFLCLSYTD LSFSQLAKII SHIVKRLKDA DNGVRDACRD AIGSLSAQFL KEKEVENGNY VGSSLVGLFA KPLFEAMAEQ NKSLQSGAAI CMGKMIDSAT
201: EPPVAAFQKL CPRISKLLNS PNYITKASLL PVVGSLSQVG AIAPQSLESL LHSIHECLGC TNWVTRKAAA DVLISLAVHS SSLVADKTDS TLTALEACRF
301: DKIKPVRESL SEALNVWKNI AGKGESGTMD DQKDVSSEQC ILERNGETDS VSCEEAGLVM QGSCDGLSSS SDSISKAVLI LRKKAPRLTG KDLNPEFFQK
401: LEKRGSGDMP VEVILPSRQK NSSNSNTEDE SDANTSVLRS RSNGLCRTAG VHTKQRHFGD FAREKWVDER MNGGESRLRA FDGDHTEVIQ ADTSENRGNW
501: PPLQRQLLHL ERQQTHIMNM LQDFMGGSHD GMISLENRVR GLERIVEEMS REMSIQSGAR GKATASWRSD VDGWDSPNYG PSSRNTQTST RKIRGTGPSE
601: QSGNSRRAWD KSSVAIRLGE GPSARSVWQA SKDEATLEAI RVAGEDCGTS RNRRVSIPEA EAMMDEDDDN RGGQQGDPIW TCWSNSVHAL RVGDTDSAFA
701: EVLSTGDDHL LVKLMDKTGP VLDQLSSDMG NEAIHSIAQF LLDHTLYDIC LSWIQQLLEV SVENGADFMG IPLELKKELL LNLHEALSTT DPPEDWEGLA
801: PDHLLVELAS NWNIEIQHFD T

Arabidopsis Description

TOR1L1TORTIFOLIA1-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:F4I6M4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.