Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G056980.6 | |
| HORVU4Hr1G024270.1 | |
| HORVU4Hr1G059090.4 | |
| HORVU5Hr1G049430.2 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G246900.8 | Wheat | plastid | 96.41 | 76.1 |
| TraesCS2A01G221200.6 | Wheat | plastid | 95.84 | 75.48 |
| TraesCS2D01G226900.1 | Wheat | plastid | 95.55 | 75.25 |
| Os07t0520400-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 84.5 | 65.81 |
| EER99458 | Sorghum | plastid | 80.34 | 60.74 |
| Zm00001d021641_P002 | Maize | plastid | 80.49 | 60.52 |
| Zm00001d006504_P005 | Maize | plastid | 71.59 | 53.71 |
| GSMUA_Achr9P11640_001 | Banana | cytosol | 56.1 | 45.41 |
| GSMUA_Achr9P02790_001 | Banana | plastid | 47.06 | 43.79 |
| VIT_19s0090g00020.t01 | Wine grape | plastid | 54.52 | 40.51 |
| PGSC0003DMT400037390 | Potato | plastid | 47.2 | 38.17 |
| Solyc10g006350.2.1 | Tomato | plastid | 46.48 | 37.5 |
| KRG98830 | Soybean | plastid | 49.35 | 37.27 |
| KRH46114 | Soybean | plastid | 48.64 | 36.61 |
| Bra030470.1-P | Field mustard | cytosol | 38.02 | 34.28 |
| CDY29609 | Canola | cytosol | 37.88 | 34.15 |
| CDY29271 | Canola | plastid | 39.89 | 32.29 |
| AT1G50890.1 | Thale cress | plastid | 37.45 | 31.79 |
| AT4G27060.1 | Thale cress | plastid | 39.31 | 31.71 |
| CDY07335 | Canola | cytosol | 36.73 | 30.88 |
| CDX89282 | Canola | plastid | 39.45 | 28.92 |
| Bra026382.1-P | Field mustard | plastid | 39.02 | 27.59 |
| HORVU5Hr1G089280.1 | Barley | cytosol | 20.52 | 17.15 |
| HORVU6Hr1G076760.1 | Barley | nucleus | 12.63 | 14.29 |
| HORVU7Hr1G040280.1 | Barley | peroxisome | 12.34 | 13.87 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G046160.2 | EnsemblPlantsGene:HORVU2Hr1G046160 | Gene3D:1.25.10.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005856 | GO:GO:0005874 | GO:GO:0008017 |
| InterPro:ARM-like | InterPro:ARM-type_fold | InterPro:IPR011989 | InterPro:TORTIFOLIA1/SPIRAL2-like | ncoils:Coil | PANTHER:PTHR31355 |
| PANTHER:PTHR31355:SF7 | SEG:seg | SUPFAM:SSF48371 | MapMan:20.1.5.3 | : | : |
Description
No Description!
Coordinates
chrchr2H:-:244621843..244628634
Molecular Weight (calculated)
75090.2 Da
IEP (calculated)
4.775
GRAVY (calculated)
-0.574
Length
697 amino acids
Sequence
(BLAST)
(BLAST)
001: XQSKTVQSGA AACLAKTVEG AGPGPGVLGM FGKLGSRVFK LVGGQGVQAK GSLLNVIGSL AQVGAISPQN MQQTLQSIRD CLENSDWATR KAAADTLCVL
101: ATYSGHLIGD GAAPTIAALE ACRFDKVRPV RDSVIDAVQL WKQLTGEDTN DGKTKEPTGS EMKLDSPSNN EKAKGSSIAE KAAVLLKKRP TLTDRELNPE
201: FFQKLETRTT DDLAVEVVVP RKTLQSHLQS EDDPEEADGD HVGAANSNGS ADDEGSLTQG RASSSFQSVR NKWAGQRGSR NKDAKTRPSD VEDRCETSAK
301: DSAPMTIPGD GPFINNKTNW LVIQKQLSQL ERQQTSLMNM LQDFMGGSHD SMVTLENRVR GLERVVEEMA RDISLSSGRR GGGSTLGFDS SPGRSSAKYN
401: GFHEYSNSKF GRGGDGRVGF ADRYFSADGM ASGVRSPSWR PDSEQWDSYA YSGSRSGMSS RRGLDSFSSD TRVPRNGNDQ AGPRRGWDKG QGPFRFGEGP
501: SARSAWRASK DEATLEAIRV AGEDNGSSRA AARVAIPELD GEALNDDNQG DGRGPLWESW TRAMDAIHVG DMDSAYAEVL SAGDAELLVK LMEQTGPVVD
601: QLSNEVSNEV LHAVGQFLVE ESFYDIALSW LQQLTDLVME NGSDYLGIPR DAKNDLLFGL HEATAIELPD DWEGATPVQI MKQLASSWHI DLQQLIN
101: ATYSGHLIGD GAAPTIAALE ACRFDKVRPV RDSVIDAVQL WKQLTGEDTN DGKTKEPTGS EMKLDSPSNN EKAKGSSIAE KAAVLLKKRP TLTDRELNPE
201: FFQKLETRTT DDLAVEVVVP RKTLQSHLQS EDDPEEADGD HVGAANSNGS ADDEGSLTQG RASSSFQSVR NKWAGQRGSR NKDAKTRPSD VEDRCETSAK
301: DSAPMTIPGD GPFINNKTNW LVIQKQLSQL ERQQTSLMNM LQDFMGGSHD SMVTLENRVR GLERVVEEMA RDISLSSGRR GGGSTLGFDS SPGRSSAKYN
401: GFHEYSNSKF GRGGDGRVGF ADRYFSADGM ASGVRSPSWR PDSEQWDSYA YSGSRSGMSS RRGLDSFSSD TRVPRNGNDQ AGPRRGWDKG QGPFRFGEGP
501: SARSAWRASK DEATLEAIRV AGEDNGSSRA AARVAIPELD GEALNDDNQG DGRGPLWESW TRAMDAIHVG DMDSAYAEVL SAGDAELLVK LMEQTGPVVD
601: QLSNEVSNEV LHAVGQFLVE ESFYDIALSW LQQLTDLVME NGSDYLGIPR DAKNDLLFGL HEATAIELPD DWEGATPVQI MKQLASSWHI DLQQLIN
001: MSTPTTSGSA AKPTRPARSS SLATRSCSNS GSLTSFQAMV ELKQKILTSI SKLADRDTYQ IAVEDLEKTI QSLTPETLPM FLNCLYDSCS DPKPAVKKEC
101: LHLLSYVCSL HCDSTAAHLT KIIAQIVKRL KDSDSGVRDA CRDTIGALSG IYLKGKEEGT NTGSASLAVG LFVKPLFEAM GEQNKVVQSG ASMCMARMVE
201: SAASPPVTSF QKLCPRICKL LSNSSFLAKA SLLPVVSSLS QVGAIAPQSL ESLLESIHDC LGSTDWVTRK AAAETLTALA SHSSGLIKEK TDSTITVLET
301: CRFDKIKPVR ESVTEALQLW KKISGKYVDG ASDDSKLSAS EQLGSEKNGE KRSNLADLMK KEASDGSTLS PDSASKGKGC FPEKAVGLLK KKAPVLSDKD
401: FNPEFFQRLE RRQSVEVVVP RRCKNNDEEE SGLDDLNAMG SSNRLKNTQA DDKQVKGRFD GNGSQARTSG DDKAGVVNGK ETPGHHAPVS NTDNQSEGSF
501: TSNRGNWSAI QRQLLQLERQ QTNLMNMLQE FIGGSHDSMV TLEGRVRGLE RIVEDMARDL SISSGRRANL TAGFGKYNSF ANYPTGKYNG RAPGERGSQT
601: DGAMRGRMWN SDMADDWFIP PHAASRNGQA GPRRSPRSEQ YENEHMGNGR RGWDNKASGT IRFGEGPSAR SVWQASKDEA TLEAIRVAGE DGAVPRPTRV
701: AVAPEAEAMG DDDNEGQERD PIWVSWSNAM HSLRVGDIDA AYAEVLCAGD QHLVIKLMDK TGPSLDQMSN EIANEALNFI SQFLLDHSLY DICLSWSQQL
801: LELVLQDGAD TFGVPMELKT EILYNLQDAC STMDPPEDWE GPAPEQLVVQ LASVWEIDLQ QFDK
101: LHLLSYVCSL HCDSTAAHLT KIIAQIVKRL KDSDSGVRDA CRDTIGALSG IYLKGKEEGT NTGSASLAVG LFVKPLFEAM GEQNKVVQSG ASMCMARMVE
201: SAASPPVTSF QKLCPRICKL LSNSSFLAKA SLLPVVSSLS QVGAIAPQSL ESLLESIHDC LGSTDWVTRK AAAETLTALA SHSSGLIKEK TDSTITVLET
301: CRFDKIKPVR ESVTEALQLW KKISGKYVDG ASDDSKLSAS EQLGSEKNGE KRSNLADLMK KEASDGSTLS PDSASKGKGC FPEKAVGLLK KKAPVLSDKD
401: FNPEFFQRLE RRQSVEVVVP RRCKNNDEEE SGLDDLNAMG SSNRLKNTQA DDKQVKGRFD GNGSQARTSG DDKAGVVNGK ETPGHHAPVS NTDNQSEGSF
501: TSNRGNWSAI QRQLLQLERQ QTNLMNMLQE FIGGSHDSMV TLEGRVRGLE RIVEDMARDL SISSGRRANL TAGFGKYNSF ANYPTGKYNG RAPGERGSQT
601: DGAMRGRMWN SDMADDWFIP PHAASRNGQA GPRRSPRSEQ YENEHMGNGR RGWDNKASGT IRFGEGPSAR SVWQASKDEA TLEAIRVAGE DGAVPRPTRV
701: AVAPEAEAMG DDDNEGQERD PIWVSWSNAM HSLRVGDIDA AYAEVLCAGD QHLVIKLMDK TGPSLDQMSN EIANEALNFI SQFLLDHSLY DICLSWSQQL
801: LELVLQDGAD TFGVPMELKT EILYNLQDAC STMDPPEDWE GPAPEQLVVQ LASVWEIDLQ QFDK
Arabidopsis Description
TOR1Microtubule-associated protein TORTIFOLIA1 [Source:UniProtKB/Swiss-Prot;Acc:Q9T041]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.