Factsheet for Zm00001d021641_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005179_P001
Zm00001d019234_P002
Zm00001d028655_P001
Zm00001d031895_P001
Zm00001d047794_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27060.1	Zm00001d005179_P001	AT5G02530.1	21798944
AT4G27060.1	Zm00001d019234_P002	AT5G02530.1	21798944
AT4G27060.1	Zm00001d028655_P001	AT5G02530.1	21798944
AT4G27060.1	Zm00001d047794_P001	AT5G02530.1	21798944
AT4G27060.1	Zm00001d031895_P001	AT5G22890.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99458	Sorghum	plastid	89.54	90.02
Os07t0520400-01	Rice	cytosol, mitochondrion, nucleus, plastid	79.29	82.12
Zm00001d006504_P005	Maize	plastid	82.09	81.92
HORVU2Hr1G046160.2	Barley	cytosol, plastid	60.52	80.49
TraesCS2B01G246900.8	Wheat	plastid	74.54	78.26
TraesCS2D01G226900.1	Wheat	plastid	72.6	76.05
TraesCS2A01G221200.6	Wheat	plastid	72.49	75.93
GSMUA_Achr9P11640_001	Banana	cytosol	52.32	56.33
GSMUA_Achr9P02790_001	Banana	plastid	41.21	51.0
VIT_19s0090g00020.t01	Wine grape	plastid	48.76	48.19
PGSC0003DMT400037390	Potato	plastid	42.61	45.82
KRG98830	Soybean	plastid	45.52	45.72
Solyc10g006350.2.1	Tomato	plastid	42.39	45.49
KRH46114	Soybean	plastid	45.42	45.46
Bra030470.1-P	Field mustard	cytosol	35.06	42.04
CDY29609	Canola	cytosol	34.95	41.91
AT1G50890.1	Thale cress	plastid	35.28	39.83
CDY29271	Canola	plastid	36.57	39.37
AT4G27060.1	Thale cress	plastid	35.81	38.43
CDY07335	Canola	cytosol	34.3	38.36
CDX89282	Canola	plastid	36.46	35.54
Bra026382.1-P	Field mustard	plastid	35.92	33.77
Zm00001d018800_P001	Maize	extracellular, mitochondrion	4.42	25.95
Zm00001d017987_P003	Maize	cytosol, mitochondrion, nucleus, plastid	15.75	23.86
Zm00001d037271_P001	Maize	cytosol	15.64	23.62
Zm00001d021378_P007	Maize	cytosol	21.47	23.47
Zm00001d044760_P001	Maize	cytosol	14.67	22.41
Zm00001d013733_P002	Maize	mitochondrion	6.47	20.76
Zm00001d016462_P001	Maize	cytosol	9.39	20.52
Zm00001d044701_P001	Maize	cytosol	10.25	19.51
Zm00001d017306_P002	Maize	cytosol	6.15	18.1

Protein Annotations

Gene3D:1.25.10.10	MapMan:20.1.5.3	UniProt:A0A1D6ID94	InterPro:ARM-like	InterPro:ARM-type_fold	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0005874	GO:GO:0008017	InterPro:IPR011989	ProteinID:ONM57790.1	PANTHER:PTHR31355
PANTHER:PTHR31355:SF7	SUPFAM:SSF48371	InterPro:TORTIFOLIA1/SPIRAL2-like	UniParc:UPI0008451A4A	EnsemblPlantsGene:Zm00001d021641	EnsemblPlants:Zm00001d021641_P002
EnsemblPlants:Zm00001d021641_T002	SEG:seg	:	:	:	:

Description

Microtubule-associated protein TORTIFOLIA1

Coordinates

chr7:-:158886139..158893885

Molecular Weight (calculated)

99328.7 Da

IEP (calculated)

5.428

GRAVY (calculated)

-0.457

Length

927 amino acids

Sequence
(BLAST)

001: MLQTPIAMAT ALSKSAVKSH PRSPTTAQPP PNPGSNAASA GVGAAPPPPP PLSAAAGATP SKNAAMVELK SRVLAALAKL SDRDTHHIAV EELERIIRAP
101: PLTDAVPMLL NALASDSPGF ASPARRESLR LLATLCASHP DAAAPHLHKV LAHLARRLKD PASDTSVRDA CRDVAGQLAA VYLRPLSASG VAEAGNATVM
201: LFVKPLFEVM GEQSKAVQGG AAACLAKAVE GAGPGPGAIG MFGKLGPRIC KLLGGHGVQA KAALLGVMGS LAQVGAISSH NMPQTLQSIR DCLENSDWAT
301: RKAAADTLCV FATHSGHLIG DGIAPTISAL EACRFDKVRP VRDSMIDAVQ LWKKLTGEDA TADGRNKDLG DGEGKLDSRR SMQSGGKSEC FDDCSPDSPS
401: NMKGSSIAEK AAVLLKKRPT LTDRELNPEF FQKLETRKTD DLAVEVVVPR KTLQSHLRSE DDTEEDDDPV GPVDSNGSAE DEANLTQMRA SSNFQNIRDR
501: WASQRGNSNK DAKSRTADVE DRGEPSTKDS TAATMNIPGE GPSVNNKTNW LAIQRQLSHL ERQQTSLMNM LQDFMGGSHD SMVTLENRVH GLERVVEEMA
601: REISLSSGRR GGGPALRFDS SPGRSSNNGF HEYSNSKFGR SGDGRMGFAE RFFSTDGMAS GMKNPSWRPD SESWDSYAYS GSRSGMNVRR GLDSVSSDNR
701: MARNERSNDQ AGPRRGWDKG QGPFRFGEGP SARSAWRASK DEATLEAIRV AGEDNGNSRA AARVAIPELD GEALNDGNQG DERGPLWEAW TRAMDAVHLD
801: DMDSAYAEVL STGDAELLVK LMEQTGPIID QLSNEVANEV LHAVGQFLVE ESFYDVALNW LQQLTDLVME NGSGYLGIPL DAKRDLLLGL HEATVIELSD
901: DWEGATPVQI MKQLASSWRI DLQQLIN

Best Arabidopsis Sequence Match ( AT1G27210.1 )
(BLAST)

001: MSVHGRFPAS PPISLSPSSS STSPSSQSPS TPPDLKQRVI ACLNKLADRD TLALASAELD SIARNLTHDS FSPFLNCIHN TDSSVKSPVR KQCVALLSVL
101: SRYHGDSLTP HLAKMVSTVI RRLRDPDSSV RSACAVATAD MSAHVTRQPF ASVAKPLIET LIQEGDSNLQ IGAALCLAAS VDAATDPESE QLRKSLPKIG
201: KLLKSDGFKA KAALLSAVGS IITAGGAGTK PVLDWLVPVL IEFLSSEDWA ARKSAAEALG KVATAEDLAS QYKKTCTTAL ESRRFDKVKS VRETMNRALN
301: LWKEVSTDDE ASLSPSRSST DDGNIGCFSS VTRSSTIDVG LKSARPKKVT PIMKRSPSLP VNRSYAATRQ KENLPKRNQG NMTMLVEEAS SVDNKGPHFT
401: PVKKSSEETE EKANSGGPDI IKHTISEKSR EDSKVSSFGG LRSGSRVAPC SDDGDSVKNC KDDVEESKKD SEELSLIREQ LALIENQQSS LLDLLQKFMG
501: TSQSGIQSLE SRVSGLEMAL DEISCDLAVS NGRVPRNSSG CAGDSCSKLP GTEFLSPKFW RKTEERPRNR NTANEMAAYD QGMRESTDTN NGQRGGSVFQ
601: KRSRRDQFQD CMHTTLQKPT TRLST

Arabidopsis Description

TOR1L4TORTIFOLIA1-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZH1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.