Factsheet for Bra026382.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002437.1-P
Bra002438.1-P
Bra005728.1-P
Bra009581.1-P
Bra020223.1-P
Bra020224.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27060.1	Bra005728.1-P	AT5G02530.1	21798944
AT4G27060.1	Bra009581.1-P	AT5G02530.1	21798944
AT4G27060.1	Bra002437.1-P	AT5G22890.1	21798944
AT4G27060.1	Bra002438.1-P	AT5G22890.1	21798944
AT4G27060.1	Bra020223.1-P	AT5G22890.1	21798944
AT4G27060.1	Bra020224.1-P	AT5G22890.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89282	Canola	plastid	80.73	83.7
AT4G27060.1	Thale cress	plastid	68.36	78.01
Bra030470.1-P	Field mustard	cytosol	41.48	52.91
KRG98830	Soybean	plastid	47.06	50.27
KRH46114	Soybean	plastid	44.73	47.62
PGSC0003DMT400037390	Potato	plastid	41.48	47.45
Solyc10g006350.2.1	Tomato	plastid	41.48	47.34
VIT_19s0090g00020.t01	Wine grape	plastid	43.61	45.84
GSMUA_Achr9P02790_001	Banana	plastid	34.69	45.66
GSMUA_Achr9P11640_001	Banana	cytosol	37.93	43.44
HORVU2Hr1G046160.2	Barley	cytosol, plastid	27.59	39.02
TraesCS2D01G226900.1	Wheat	plastid	34.79	38.76
TraesCS2A01G221200.6	Wheat	plastid	34.69	38.64
TraesCS2B01G246900.8	Wheat	plastid	34.38	38.39
Os07t0520400-01	Rice	cytosol, mitochondrion, nucleus, plastid	34.79	38.32
EER99458	Sorghum	plastid	35.5	37.96
Zm00001d021641_P002	Maize	plastid	33.77	35.92
Zm00001d006504_P005	Maize	plastid	32.86	34.88
Bra035420.1-P	Field mustard	cytosol, nucleus, plastid	13.69	29.41
Bra035889.1-P	Field mustard	cytosol	14.5	25.44
Bra016316.1-P	Field mustard	plastid	15.52	25.25
Bra010100.1-P	Field mustard	cytosol	14.4	24.48
Bra007853.1-P	Field mustard	nucleus	5.27	24.41
Bra024646.1-P	Field mustard	plastid	15.01	23.2

Protein Annotations

MapMan:20.1.5.3	InterPro:ARM-type_fold	EnsemblPlantsGene:Bra026382	EnsemblPlants:Bra026382.1	EnsemblPlants:Bra026382.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007275	GO:GO:0008017	GO:GO:0008150
GO:GO:0009653	GO:GO:0009826	GO:GO:0009987	GO:GO:0010005	GO:GO:0010031	GO:GO:0016043
GO:GO:0016049	GO:GO:0040007	UniProt:M4EC73	PANTHER:PTHR31355	PANTHER:PTHR31355:SF7	SUPFAM:SSF48371
InterPro:TORTIFOLIA1/SPIRAL2-like	UniParc:UPI0002545760	SEG:seg	:	:	:

Description

AT4G27060 (E=7e-201) TOR1, SPR2, CN | TOR1 (TORTIFOLIA 1); microtubule binding

Coordinates

chrA01:-:9630360..9638236

Molecular Weight (calculated)

106769.0 Da

IEP (calculated)

6.082

GRAVY (calculated)

-0.503

Length

986 amino acids

Sequence
(BLAST)

001: MSTPSSSASA AKPTRPARSS NATARSSSSN SNSNSHSLTS FQAMVEQKQK ILTSISKLAD RDTYQIAVED LEKTIQSLTP ETLPMFLNCL YDSCSDPKPA
101: VKKECLHLLS YVCSLHSDST AAHLTRIIAQ IVKRLKDPDS GVRDACRDTI GALSGIYLKG REEGSNTLAV GLFVKPLFEA MGEQNKVVQS GAAMCMARMV
201: ESAATPPVAS FQKLCPRICK LLSNSSFLAK ASLLPVVSSL SQVCSEPLKG CSFGCRRYRR QRQRQHSAST LVRFVDAGTD GSGSVRTLRP AADADKTCAS
301: AKRTTTVLID AAAAADAAAA AAAETCGNQT NRALISYVTM GSMFDVVVGA IAPQSLESLL ESIHDCLGSS DWVTRKAAAE TLSSLASHSS SLLKDRTDST
401: LAALETCRFD KIKPVRETVT EALQLWKKIS GKCLDGAPDE SKSSSGEQLG SEKNGDKRSN LSDLMKKEAS DGSILSPDSA SKAKGGLPEK AAVMLKKKAP
501: ALSDKDFNPE FFQRLERRQS VEVVVPRRCK NEDGEELGPD DLNAMGSSNR FKNIQSNDHG FPDSKFHNLE SGSDKLVKGR SDGNISQAGT SADDKAGGVN
601: GKQTAGNHAA ISDTDNHSDG SFTSNRGNWS AIQRQLLQLE RQQTNLMNML QEFIGGSHDS MVTLEGRVRG LERIVEDMAR DLSISSGRRG NPTAGFGKYN
701: SFANYSSGKY NGRGPGDRGS QPDGAMRGRM WSSDMQDDWF MHQHGASRNG QTGPRRSPRS EQYQNEHMGN GRRGWDNKAA GTIRYGEGPS ARSVWQASKD
801: EATLEAIRVA GEDGAVTRPT RVAAVPEAEA MGDEESEGQE RDPIWSSWSN AMHSLRVGDV DSAYAEVLCA GDQHLIIKLM DKTGPSLDQM SNEIANEALN
901: FIAQFLLDHN LYDICLSWIQ QLLELVLQDG ADTFGVPMEL KSDILFNLQD ACSTMDPPEE WEGPAPEELV MQLASVWEID LQQFDK

Best Arabidopsis Sequence Match ( AT4G27060.1 )
(BLAST)

001: MSTPTTSGSA AKPTRPARSS SLATRSCSNS GSLTSFQAMV ELKQKILTSI SKLADRDTYQ IAVEDLEKTI QSLTPETLPM FLNCLYDSCS DPKPAVKKEC
101: LHLLSYVCSL HCDSTAAHLT KIIAQIVKRL KDSDSGVRDA CRDTIGALSG IYLKGKEEGT NTGSASLAVG LFVKPLFEAM GEQNKVVQSG ASMCMARMVE
201: SAASPPVTSF QKLCPRICKL LSNSSFLAKA SLLPVVSSLS QVGAIAPQSL ESLLESIHDC LGSTDWVTRK AAAETLTALA SHSSGLIKEK TDSTITVLET
301: CRFDKIKPVR ESVTEALQLW KKISGKYVDG ASDDSKLSAS EQLGSEKNGE KRSNLADLMK KEASDGSTLS PDSASKGKGC FPEKAVGLLK KKAPVLSDKD
401: FNPEFFQRLE RRQSVEVVVP RRCKNNDEEE SGLDDLNAMG SSNRLKNTQA DDKQVKGRFD GNGSQARTSG DDKAGVVNGK ETPGHHAPVS NTDNQSEGSF
501: TSNRGNWSAI QRQLLQLERQ QTNLMNMLQE FIGGSHDSMV TLEGRVRGLE RIVEDMARDL SISSGRRANL TAGFGKYNSF ANYPTGKYNG RAPGERGSQT
601: DGAMRGRMWN SDMADDWFIP PHAASRNGQA GPRRSPRSEQ YENEHMGNGR RGWDNKASGT IRFGEGPSAR SVWQASKDEA TLEAIRVAGE DGAVPRPTRV
701: AVAPEAEAMG DDDNEGQERD PIWVSWSNAM HSLRVGDIDA AYAEVLCAGD QHLVIKLMDK TGPSLDQMSN EIANEALNFI SQFLLDHSLY DICLSWSQQL
801: LELVLQDGAD TFGVPMELKT EILYNLQDAC STMDPPEDWE GPAPEQLVVQ LASVWEIDLQ QFDK

Arabidopsis Description

TOR1Microtubule-associated protein TORTIFOLIA1 [Source:UniProtKB/Swiss-Prot;Acc:Q9T041]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.