Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra000943.1-P | |
| Bra017007.1-P | |
| Bra017974.1-P | |
| Bra037384.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G22890.1 | Bra017007.1-P | AT2G19650.1 | 21798944 |
| AT5G22890.1 | Bra017974.1-P | AT3G49580.1 | 21798944 |
| AT5G22890.1 | Bra000943.1-P | AT4G01090.1 | 21798944 |
| AT5G22890.1 | Bra037384.1-P | AT4G01090.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY09178 | Canola | nucleus | 97.98 | 78.86 |
| Bra020224.1-P | Field mustard | nucleus | 76.77 | 75.75 |
| Bra002438.1-P | Field mustard | nucleus | 71.04 | 56.12 |
| Bra002437.1-P | Field mustard | nucleus | 46.13 | 55.02 |
| AT5G22890.1 | Thale cress | nucleus | 65.99 | 52.55 |
| GSMUA_Achr1P15330_001 | Banana | cytosol | 30.98 | 32.74 |
| VIT_06s0061g00780.t01 | Wine grape | nucleus | 37.37 | 28.46 |
| Solyc11g066420.1.1 | Tomato | nucleus, plastid | 36.36 | 28.12 |
| PGSC0003DMT400001105 | Potato | nucleus | 29.97 | 27.99 |
| KRH22822 | Soybean | plastid | 25.93 | 27.7 |
| GSMUA_Achr11P... | Banana | nucleus | 29.97 | 26.18 |
| TraesCS1A01G060200.1 | Wheat | nucleus | 31.31 | 24.22 |
| TraesCS1B01G078700.1 | Wheat | nucleus | 31.31 | 23.72 |
| Os08t0562300-01 | Rice | nucleus | 30.64 | 23.64 |
| TraesCS1D01G061200.1 | Wheat | nucleus | 29.63 | 22.74 |
| Zm00001d031895_P001 | Maize | nucleus | 31.31 | 22.2 |
| OQU80698 | Sorghum | nucleus | 30.98 | 21.65 |
| Os04t0165200-01 | Rice | nucleus | 25.59 | 20.49 |
| Bra040971.1-P | Field mustard | nucleus | 23.57 | 16.43 |
| Bra036750.1-P | Field mustard | nucleus | 24.92 | 15.07 |
| Bra003295.1-P | Field mustard | nucleus | 12.46 | 15.04 |
| Bra014612.1-P | Field mustard | nucleus, plastid | 15.49 | 12.64 |
| Bra007346.1-P | Field mustard | nucleus | 12.79 | 12.38 |
| Bra028067.1-P | Field mustard | nucleus | 11.78 | 12.2 |
| Bra030450.1-P | Field mustard | nucleus | 13.13 | 11.47 |
| Bra031239.1-P | Field mustard | nucleus | 13.8 | 11.42 |
| Bra023918.1-P | Field mustard | nucleus | 13.8 | 11.42 |
| Bra019822.1-P | Field mustard | nucleus | 11.78 | 11.36 |
| Bra018902.1-P | Field mustard | plastid | 12.79 | 11.28 |
| Bra018638.1-P | Field mustard | nucleus | 12.79 | 11.28 |
| Bra031621.1-P | Field mustard | nucleus | 11.45 | 10.09 |
Protein Annotations
| EnsemblPlants:Bra020223.1 | EnsemblPlants:Bra020223.1-P | EnsemblPlantsGene:Bra020223 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF41 |
| PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI000254350F |
| UniProt:M4DUN0 | MapMan:15.5.15 | : | : | : | : |
Description
AT5G22890 (E=6e-087) | zinc finger (C2H2 type) family protein
Coordinates
chrA02:-:5654187..5655080
Molecular Weight (calculated)
33676.2 Da
IEP (calculated)
6.723
GRAVY (calculated)
-0.667
Length
297 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQGDHIINN GEGSVCCFSE TTTTSSNPVY NNPMTAATKS SEDEDDISLS LLLNLSTMQN KVHQIKSLVS FFMISTNNNN QSTESTSYLA VANIESLVQD
101: IITAANSMMF TCQQLHISSN NNSNFDNDKI VTDFFPRVID RHNDFTRESS ANFLGVQERG RSSFLDQTTQ NLDWYGTQTI NPKKEDHRYK SRSGDYELVE
201: LGVADLLAKY THYCQICGKG FKRDANLRMH MRAHGDEYKT REALISPTSH DKEVECSSTR HYYSCPQQGC RWNQRHEKFQ PLKSVIVRKC ICAGNAT
101: IITAANSMMF TCQQLHISSN NNSNFDNDKI VTDFFPRVID RHNDFTRESS ANFLGVQERG RSSFLDQTTQ NLDWYGTQTI NPKKEDHRYK SRSGDYELVE
201: LGVADLLAKY THYCQICGKG FKRDANLRMH MRAHGDEYKT REALISPTSH DKEVECSSTR HYYSCPQQGC RWNQRHEKFQ PLKSVIVRKC ICAGNAT
001: MHIHMMNRDE HIAKKVEGSI SSFSGETSTS SKQIYVNPVT TTGTKSMEDD DVSLSLLYNL STLHEKVHQI QSLVSFYMVS TNNINQSSGS TSLAVANIGS
101: LVQEIITAAS SMLYTCQQLQ IGSNNNNNDI DNDQTVDAMV LEFSRQETDP GHDFVQESTN LFGVQERGQI SFPDQNLDWY NTETINPKKD KHRSKPSSGS
201: YDILELDVAD LLAKYTHYCQ ICGKGFKRDA NLRMHMRAHG DEYKTREALI SPTSQDKKGG YSLKKHYYSC PQHGCRWNQR HEKFQPLKSV ICAKNHYKRS
301: HCPKMYMCRR CSVKHFSVLS DLRTHEKHCG DIKWVCSCGT KFSRKDKLMS HVSLFLGHVP AHGSSKPPTI TLK
101: LVQEIITAAS SMLYTCQQLQ IGSNNNNNDI DNDQTVDAMV LEFSRQETDP GHDFVQESTN LFGVQERGQI SFPDQNLDWY NTETINPKKD KHRSKPSSGS
201: YDILELDVAD LLAKYTHYCQ ICGKGFKRDA NLRMHMRAHG DEYKTREALI SPTSQDKKGG YSLKKHYYSC PQHGCRWNQR HEKFQPLKSV ICAKNHYKRS
301: HCPKMYMCRR CSVKHFSVLS DLRTHEKHCG DIKWVCSCGT KFSRKDKLMS HVSLFLGHVP AHGSSKPPTI TLK
Arabidopsis Description
STOP2Protein SENSITIVE TO PROTON RHIZOTOXICITY 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WT24]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.