Factsheet for Bra002437.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000943.1-P
Bra017007.1-P
Bra017974.1-P
Bra037384.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G22890.1	Bra017007.1-P	AT2G19650.1	21798944
AT5G22890.1	Bra017974.1-P	AT3G49580.1	21798944
AT5G22890.1	Bra000943.1-P	AT4G01090.1	21798944
AT5G22890.1	Bra037384.1-P	AT4G01090.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69109	Canola	nucleus	90.76	60.75
Bra020224.1-P	Field mustard	nucleus	57.83	47.84
Bra002438.1-P	Field mustard	nucleus	70.68	46.81
Bra020223.1-P	Field mustard	nucleus	55.02	46.13
AT5G22890.1	Thale cress	nucleus	53.41	35.66
GSMUA_Achr1P15330_001	Banana	cytosol	22.49	19.93
Solyc11g066420.1.1	Tomato	nucleus, plastid	29.72	19.27
VIT_06s0061g00780.t01	Wine grape	nucleus	29.32	18.72
PGSC0003DMT400001105	Potato	nucleus	21.29	16.67
GSMUA_Achr11P...	Banana	nucleus	20.08	14.71
KRH22822	Soybean	plastid	16.06	14.39
TraesCS1A01G060200.1	Wheat	nucleus	20.08	13.02
TraesCS1D01G061200.1	Wheat	nucleus	20.08	12.92
Zm00001d031895_P001	Maize	nucleus	21.29	12.65
TraesCS1B01G078700.1	Wheat	nucleus	19.68	12.5
OQU80698	Sorghum	nucleus	20.88	12.24
Os08t0562300-01	Rice	nucleus	18.88	12.21
Os04t0165200-01	Rice	nucleus	17.67	11.86
Bra040971.1-P	Field mustard	nucleus	15.26	8.92
Bra036750.1-P	Field mustard	nucleus	17.27	8.76
Bra014612.1-P	Field mustard	nucleus, plastid	9.64	6.59
Bra018638.1-P	Field mustard	nucleus	8.84	6.53
Bra030450.1-P	Field mustard	nucleus	8.43	6.18
Bra018902.1-P	Field mustard	plastid	8.03	5.93
Bra028067.1-P	Field mustard	nucleus	6.83	5.92
Bra023918.1-P	Field mustard	nucleus	8.43	5.85
Bra031239.1-P	Field mustard	nucleus	8.43	5.85
Bra019822.1-P	Field mustard	nucleus	6.83	5.52
Bra003295.1-P	Field mustard	nucleus	5.22	5.28
Bra031621.1-P	Field mustard	nucleus	6.83	5.04
Bra007346.1-P	Field mustard	nucleus	6.02	4.89

Protein Annotations

EnsemblPlants:Bra002437.1	EnsemblPlants:Bra002437.1-P	EnsemblPlantsGene:Bra002437	PANTHER:PTHR10593	PANTHER:PTHR10593:SF41	SEG:seg
UniParc:UPI00025442C8	UniProt:M4CE06	MapMan:35.1	:	:	:

Description

AT5G22890 (E=3e-034) | zinc finger (C2H2 type) family protein

Coordinates

chrA10:+:9596916..9597665

Molecular Weight (calculated)

27739.9 Da

IEP (calculated)

4.404

GRAVY (calculated)

-0.473

Length

249 amino acids

Sequence
(BLAST)

001: MNQRGLMMNT GEWSMSCCSE TNSSSTIYTN SMAAATRSSG DDISLSLLFN LSTIQDKVHE IQSLVNFFMI SPSNNNQSWE STSSLAAANV ESLVQDIITA
101: ASSMMLTCQS LQISTGDNSN IDTSQTTDGT FMEFSQDFDP GHDFVQESST NLLGVRDFDP DHDFLQESSS NLLGVQEREH VSLIDQSLDW HSIQTSNPKT
201: DHHYFKSRTG NYEIVELSVE DLLAKYTHYC QICGKGFKHT ETSTRHVKP

Best Arabidopsis Sequence Match ( AT5G22890.1 )
(BLAST)

001: MHIHMMNRDE HIAKKVEGSI SSFSGETSTS SKQIYVNPVT TTGTKSMEDD DVSLSLLYNL STLHEKVHQI QSLVSFYMVS TNNINQSSGS TSLAVANIGS
101: LVQEIITAAS SMLYTCQQLQ IGSNNNNNDI DNDQTVDAMV LEFSRQETDP GHDFVQESTN LFGVQERGQI SFPDQNLDWY NTETINPKKD KHRSKPSSGS
201: YDILELDVAD LLAKYTHYCQ ICGKGFKRDA NLRMHMRAHG DEYKTREALI SPTSQDKKGG YSLKKHYYSC PQHGCRWNQR HEKFQPLKSV ICAKNHYKRS
301: HCPKMYMCRR CSVKHFSVLS DLRTHEKHCG DIKWVCSCGT KFSRKDKLMS HVSLFLGHVP AHGSSKPPTI TLK

Arabidopsis Description

STOP2Protein SENSITIVE TO PROTON RHIZOTOXICITY 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WT24]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.