Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_16s0098g00600.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G22890.1 | VIT_16s0098g00600.t01 | AT3G49580.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P15330_001 | Banana | cytosol | 41.79 | 58.01 |
| PGSC0003DMT400001105 | Potato | nucleus | 44.87 | 55.03 |
| Solyc11g066420.1.1 | Tomato | nucleus, plastid | 52.31 | 53.12 |
| KRH26538 | Soybean | nucleus, plastid | 53.59 | 50.98 |
| CDY09179 | Canola | nucleus | 41.28 | 49.69 |
| GSMUA_Achr11P... | Banana | nucleus | 41.79 | 47.94 |
| AT5G22890.1 | Thale cress | nucleus | 45.64 | 47.72 |
| CDY26965 | Canola | nucleus | 42.31 | 45.08 |
| CDY09178 | Canola | nucleus | 42.56 | 44.99 |
| CDY26966 | Canola | nucleus | 43.08 | 44.68 |
| CDX98183 | Canola | nucleus | 42.82 | 44.41 |
| CDY31715 | Canola | nucleus | 42.82 | 44.41 |
| CDX74505 | Canola | nucleus | 42.82 | 44.41 |
| Bra002438.1-P | Field mustard | nucleus | 42.82 | 44.41 |
| CDY69109 | Canola | nucleus | 42.05 | 44.09 |
| TraesCS1A01G060200.1 | Wheat | nucleus | 43.33 | 44.01 |
| TraesCS1D01G061200.1 | Wheat | nucleus | 42.82 | 43.15 |
| TraesCS1B01G078700.1 | Wheat | nucleus | 43.33 | 43.11 |
| Os08t0562300-01 | Rice | nucleus | 41.79 | 42.34 |
| OQU80698 | Sorghum | nucleus | 44.62 | 40.94 |
| Zm00001d031895_P001 | Maize | nucleus | 43.08 | 40.1 |
| Os04t0165200-01 | Rice | nucleus | 36.15 | 38.01 |
| Bra020224.1-P | Field mustard | nucleus | 29.23 | 37.87 |
| Bra020223.1-P | Field mustard | nucleus | 28.46 | 37.37 |
| Bra002437.1-P | Field mustard | nucleus | 18.72 | 29.32 |
| VIT_07s0141g00020.t01 | Wine grape | vacuole | 28.46 | 26.43 |
| VIT_18s0072g00840.t01 | Wine grape | nucleus | 34.1 | 25.24 |
| VIT_18s0001g05860.t01 | Wine grape | nucleus | 16.15 | 23.08 |
| VIT_01s0011g03100.t01 | Wine grape | nucleus | 16.15 | 22.91 |
| VIT_06s0004g01870.t01 | Wine grape | nucleus | 17.18 | 20.06 |
| VIT_06s0080g00270.t01 | Wine grape | plastid | 17.69 | 19.88 |
| VIT_08s0007g08070.t01 | Wine grape | nucleus | 17.18 | 19.42 |
| VIT_13s0064g01060.t01 | Wine grape | nucleus | 16.92 | 19.24 |
Protein Annotations
| EntrezGene:100244865 | wikigene:100244865 | MapMan:15.5.15 | Gene3D:3.30.160.60 | EMBL:AM427000 | ProteinID:CAN64546 |
| ProteinID:CAN64546.1 | ProteinID:CCB44214 | ProteinID:CCB44214.1 | UniProt:F6GW79 | EMBL:FN594957 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR013087 | EntrezGene:LOC100244865 | wikigene:LOC100244865 | ScanProsite:PS00028 |
| PFscan:PS50157 | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF41 | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI000210A309 |
| ArrayExpress:VIT_06s0061g00780 | EnsemblPlantsGene:VIT_06s0061g00780 | EnsemblPlants:VIT_06s0061g00780.t01 | RefSeq:XP_002272574 | RefSeq:XP_002272574.1 | RefSeq:XP_010651763.1 |
| InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr6:+:18312413..18313585
Molecular Weight (calculated)
43045.3 Da
IEP (calculated)
8.381
GRAVY (calculated)
-0.511
Length
390 amino acids
Sequence
(BLAST)
(BLAST)
001: MIPVGTSNCF VNGSQGLQMY GMTAEGSVSS SLGGSSVLEA HSCSLVYSFS ILKDKVHQVQ SLISIFVPPN QGQPESMAMA VAGMGNLIQE VIAAASSMMY
101: SCQQMGYGAA PGNSGTNHGL PQQGVELSDG RVCGDTGVVQ MGEERGQGFY SSDQSLDWYG DNHNNSNTND HSRTIIVSNN DKVESRELPQ GSTQMNEGLG
201: GVLPKTFDIV ELDAEDLLAK YTHYCQICGK GFKRDANLRM HMRAHGDEYK SNAALSNPTK NIGREMENKD DLIKLPRKYS CPQEGCRWNR KHAKFQPLKS
301: MICVKNHYKR SHCPKMYICK RCNQKQFSVL SDLRTHEKHC GDLKWLCSCG TTFSRKDKLM GHVALFVGHT PAINSMSKPV KFYQNASRLQ
101: SCQQMGYGAA PGNSGTNHGL PQQGVELSDG RVCGDTGVVQ MGEERGQGFY SSDQSLDWYG DNHNNSNTND HSRTIIVSNN DKVESRELPQ GSTQMNEGLG
201: GVLPKTFDIV ELDAEDLLAK YTHYCQICGK GFKRDANLRM HMRAHGDEYK SNAALSNPTK NIGREMENKD DLIKLPRKYS CPQEGCRWNR KHAKFQPLKS
301: MICVKNHYKR SHCPKMYICK RCNQKQFSVL SDLRTHEKHC GDLKWLCSCG TTFSRKDKLM GHVALFVGHT PAINSMSKPV KFYQNASRLQ
001: MHIHMMNRDE HIAKKVEGSI SSFSGETSTS SKQIYVNPVT TTGTKSMEDD DVSLSLLYNL STLHEKVHQI QSLVSFYMVS TNNINQSSGS TSLAVANIGS
101: LVQEIITAAS SMLYTCQQLQ IGSNNNNNDI DNDQTVDAMV LEFSRQETDP GHDFVQESTN LFGVQERGQI SFPDQNLDWY NTETINPKKD KHRSKPSSGS
201: YDILELDVAD LLAKYTHYCQ ICGKGFKRDA NLRMHMRAHG DEYKTREALI SPTSQDKKGG YSLKKHYYSC PQHGCRWNQR HEKFQPLKSV ICAKNHYKRS
301: HCPKMYMCRR CSVKHFSVLS DLRTHEKHCG DIKWVCSCGT KFSRKDKLMS HVSLFLGHVP AHGSSKPPTI TLK
101: LVQEIITAAS SMLYTCQQLQ IGSNNNNNDI DNDQTVDAMV LEFSRQETDP GHDFVQESTN LFGVQERGQI SFPDQNLDWY NTETINPKKD KHRSKPSSGS
201: YDILELDVAD LLAKYTHYCQ ICGKGFKRDA NLRMHMRAHG DEYKTREALI SPTSQDKKGG YSLKKHYYSC PQHGCRWNQR HEKFQPLKSV ICAKNHYKRS
301: HCPKMYMCRR CSVKHFSVLS DLRTHEKHCG DIKWVCSCGT KFSRKDKLMS HVSLFLGHVP AHGSSKPPTI TLK
Arabidopsis Description
STOP2Protein SENSITIVE TO PROTON RHIZOTOXICITY 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WT24]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.