Factsheet for VIT_13s0064g01060.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017556	Potato	nucleus	34.4	82.52
VIT_08s0007g08070.t01	Wine grape	nucleus	62.39	62.03
VIT_06s0004g01870.t01	Wine grape	nucleus	60.35	61.98
Solyc01g087050.2.1	Tomato	nucleus	53.64	61.74
KRH13927	Soybean	nucleus, plastid	61.22	61.4
KRH43510	Soybean	nucleus, plastid	60.93	60.4
KRH27491	Soybean	nucleus, plastid	58.89	57.39
KRH20837	Soybean	nucleus, plastid	58.6	56.3
GSMUA_Achr4P06350_001	Banana	nucleus	48.69	53.87
VIT_18s0001g05860.t01	Wine grape	nucleus	42.86	53.85
VIT_01s0011g03100.t01	Wine grape	nucleus	42.86	53.45
GSMUA_Achr9P22340_001	Banana	nucleus	55.69	52.33
TraesCS7A01G404400.1	Wheat	nucleus	54.81	51.09
TraesCS7B01G304000.1	Wheat	nucleus	54.52	50.54
TraesCS7D01G397800.1	Wheat	nucleus	54.23	50.27
Zm00001d036812_P001	Maize	nucleus	55.1	48.59
EER88644	Sorghum	nucleus, plastid	55.98	47.52
Zm00001d046774_P001	Maize	nucleus	54.81	47.24
VIT_06s0080g00270.t01	Wine grape	plastid	44.9	44.38
Os06t0612300-01	Rice	endoplasmic reticulum, vacuole	55.1	42.47
VIT_06s0061g00780.t01	Wine grape	nucleus	19.24	16.92
VIT_07s0141g00020.t01	Wine grape	vacuole	20.7	16.9
VIT_18s0072g00840.t01	Wine grape	nucleus	25.36	16.51

Protein Annotations

EntrezGene:100244743	wikigene:100244743	MapMan:15.5.15	Gene3D:3.30.160.60	ProteinID:CCB49503	ProteinID:CCB49503.1
ncoils:Coil	UniProt:F6HBF1	EMBL:FN595509	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	EntrezGene:LOC100244743	wikigene:LOC100244743	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR10593
PANTHER:PTHR10593:SF72	UniParc:UPI000210A6E4	ArrayExpress:VIT_13s0064g01060	EnsemblPlantsGene:VIT_13s0064g01060	EnsemblPlants:VIT_13s0064g01060.t01	RefSeq:XP_002275710
RefSeq:XP_002275710.2	InterPro:Znf_C2H2_type	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr13:+:22957538..22960581

Molecular Weight (calculated)

38534.4 Da

IEP (calculated)

7.641

GRAVY (calculated)

-0.734

Length

343 amino acids

Sequence
(BLAST)

001: MTDPHCNFFK GWFNFMPLQP HFPPSISPYP AHACNNLYSQ SQTPPPSPPL KEALPLLSLS PISRRQDEPQ VLPCSSAMEE EEKEEEEEDK IKTRDKAQSL
101: FSTSASDGDD KRTVTVALHI GLPSPSSDLV GSSLPSSTEM SIDQDQGILG ASGCPFNRVN NGQYWIPTPS QILIGPTQFS CAVCCKTFNR YNNLQMHMWG
201: HGSQYRKGPE SLRGTQPTAM LKLPCYCCSP GCKHNIDHPR SRPLKDFRTL QTHYKRKHGI KHFLCRKCNK PFAVKGDWRT HEKNCGKVWY CICGSDFKHK
301: RSLKDHIKAF GRGHAAIGTD FFDQEEDDPA SEIEHDGEPS PSV

Best Arabidopsis Sequence Match ( AT3G57670.1 )
(BLAST)

001: MTDPYSNFFT DWFKSNPFHH YPNSSTNPSP HPLPPVTPPS SFFFFPQSGD LRRPPPPPTP PPSPPLREAL PLLSLSPANK QQDHHHNHDH LIQEPPSTSM
101: DVDYDHHHQD DHHNLDDDDH DVTVALHIGL PSPSAQEMAS LLMMSSSSSS SRTTHHHEDM NHKKDLDHEY SHGAVGGGED DDEDSVGGDG GCRISRLNKG
201: QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP
301: FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS LKDHIKAFGN GHGAYGIDGF DEEDEPASEV EQLDNDHESM QSK

Arabidopsis Description

WIP2WIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VLW5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.