Factsheet for VIT_18s0072g00840.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g065440.1.1	Tomato	cytosol	44.97	67.52
Solyc11g017140.1.1	Tomato	nucleus	60.72	65.98
KRG91822	Soybean	nucleus, plastid	63.19	65.42
PGSC0003DMT400023881	Potato	nucleus	63.38	65.11
KRH34957	Soybean	nucleus, plastid	62.24	64.69
PGSC0003DMT400067092	Potato	nucleus	52.56	63.97
KRH08551	Soybean	nucleus, plastid	63.0	63.72
CDY46467	Canola	nucleus	58.82	63.52
Bra036750.1-P	Field mustard	nucleus	58.63	62.93
CDX91774	Canola	nucleus	58.82	62.5
AT1G34370.1	Thale cress	nucleus	59.01	62.32
CDY03148	Canola	nucleus	50.85	62.18
CDY12041	Canola	nucleus	47.63	61.37
Bra040971.1-P	Field mustard	nucleus	49.34	61.03
GSMUA_Achr5P01170_001	Banana	nucleus	45.16	60.56
GSMUA_Achr6P18840_001	Banana	nucleus	43.83	55.93
KXG33778	Sorghum	nucleus	51.61	52.41
Zm00001d012260_P001	Maize	nucleus	51.61	52.41
Os01t0871200-03	Rice	nucleus	51.61	52.11
TraesCS3A01G381900.1	Wheat	nucleus	50.66	51.54
TraesCS3D01G375000.1	Wheat	nucleus	50.85	51.54
TraesCS3B01G414500.1	Wheat	nucleus	50.85	51.54
Zm00001d042686_P001	Maize	nucleus	50.09	50.97
VIT_06s0061g00780.t01	Wine grape	nucleus	25.24	34.1
VIT_07s0141g00020.t01	Wine grape	vacuole	25.81	32.38
VIT_01s0011g03100.t01	Wine grape	nucleus	14.23	27.27
VIT_18s0001g05860.t01	Wine grape	nucleus	13.47	26.01
VIT_13s0064g01060.t01	Wine grape	nucleus	16.51	25.36
VIT_08s0007g08070.t01	Wine grape	nucleus	16.51	25.22
VIT_06s0004g01870.t01	Wine grape	nucleus	15.75	24.85
VIT_06s0080g00270.t01	Wine grape	plastid	14.8	22.48

Protein Annotations

EntrezGene:100248677	wikigene:100248677	MapMan:15.5.15	Gene3D:3.30.160.60	UniProt:A5BSF5	EMBL:AM469305
ProteinID:CAN81435	ProteinID:CAN81435.1	ProteinID:CCB44855	ProteinID:CCB44855.1	EMBL:FN594968	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087	EntrezGene:LOC100248677	wikigene:LOC100248677	ScanProsite:PS00028
PFscan:PS50157	PANTHER:PTHR10593	PANTHER:PTHR10593:SF71	SMART:SM00355	SUPFAM:SSF57667	TIGR:TC59755
UniParc:UPI0001524981	ArrayExpress:VIT_18s0072g00840	EnsemblPlantsGene:VIT_18s0072g00840	EnsemblPlants:VIT_18s0072g00840.t01	unigene:Vvi.9482	RefSeq:XP_002270196
RefSeq:XP_002270196.1	RefSeq:XP_003634509	RefSeq:XP_003634509.1	RefSeq:XP_003634510	RefSeq:XP_003634510.1	RefSeq:XP_019072266.1
RefSeq:XP_019072267.1	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:	:

Description

No Description!

Coordinates

chr18:-:20208098..20209841

Molecular Weight (calculated)

58025.0 Da

IEP (calculated)

6.457

GRAVY (calculated)

-0.612

Length

527 amino acids

Sequence
(BLAST)

001: MDLKDRLSVD TWTQSSSSGN ELPKDQQSFT NFSLQQQQHQ HKWEDPSVLD YSVRIEPAFQ EFNQTSATSS SLPCNPNSQI KNLNREDCQM NEMLEPNRIQ
101: DWDPRVMLSN LSFLEQKIHQ LQDLVHLIVG RRSQVLGRTN ELVAQQQQLV TADLTSIIVQ LITTAGTLLP SVKNTLSTAS PSVGQLGQLG GVLFPSGTGM
201: NGGGVAQSSG GSKVSDQSNQ IDLTGACVIE QNNATEEHEL KDEDDADEGE NLPPGSYEIL QLEKEEILAP HTHFCMICGK GFKRDANLRM HMRGHGDEYK
301: TPAALAKPNK ESSSEPVLIK RYSCPFAGCK RNKDHKKFQP LKTILCVKNH YKRTHCDKSY TCSRCNTKKF SVIADLKTHE KHCGKDKWLC SCGTTFSRKD
401: KLFGHIALFQ GHTPAIPLDE TKGSVGPSDR GEGNGAANKV GSVGFNFSSN ASSGSGVQDM MMDVKRGADE PTGFFSPLTF DPCSLVGFHE FPRPPFEDSE
501: SSFSFLVPGS CSYTRKTGGE SSSNDLE

Best Arabidopsis Sequence Match ( AT1G34370.2 )
(BLAST)

001: METEDDLCNT NWGSSSSKSR EPGSSDCGNS TFAGFTSQQK WEDASILDYE MGVEPGLQES IQANVDFLQG VRAQAWDPRT MLSNLSFMEQ KIHQLQDLVH
101: LLVGRGGQLQ GRQDELAAQQ QQLITTDLTS IIIQLISTAG SLLPSVKHNM STAPGPFTGQ PGSAVFPYVR EANNVASQSQ NNNNCGAREF DLPKPVLVDE
201: REGHVVEEHE MKDEDDVEEG ENLPPGSYEI LQLEKEEILA PHTHFCTICG KGFKRDANLR MHMRGHGDEY KTAAALAKPN KESVPGSEPM LIKRYSCPFL
301: GCKRNKEHKK FQPLKTILCV KNHYKRTHCD KSFTCSRCHT KKFSVIADLK THEKHCGKNK WLCSCGTTFS RKDKLFGHIA LFQGHTPAIP LEETKPSAST
401: STQRGSSEGG NNNQGMVGFN LGSASNANQE TTQPGMTDGR ICFEESFSPM NFDTCNFGGF HEFPRLMFDD SESSFQMLIA NACGFSPRNV GESVSDTSL

Arabidopsis Description

STOP1Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8N5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.