Factsheet for PGSC0003DMT400067092

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g065440.1.1	Tomato	cytosol	74.36	91.74
PGSC0003DMT400023881	Potato	nucleus	71.36	60.23
CDY12041	Canola	nucleus	49.65	52.57
VIT_18s0072g00840.t01	Wine grape	nucleus	63.97	52.56
KRG91822	Soybean	nucleus, plastid	61.43	52.26
Bra040971.1-P	Field mustard	nucleus	51.04	51.88
CDY03148	Canola	nucleus	51.5	51.74
KRH34957	Soybean	nucleus, plastid	60.28	51.48
GSMUA_Achr5P01170_001	Banana	nucleus	45.96	50.64
CDY46467	Canola	nucleus	55.2	48.98
Bra036750.1-P	Field mustard	nucleus	54.97	48.47
AT1G34370.1	Thale cress	nucleus	55.66	48.3
CDX91774	Canola	nucleus	55.2	48.19
KRH08551	Soybean	nucleus, plastid	57.74	47.98
GSMUA_Achr6P18840_001	Banana	nucleus	43.88	46.0
Os01t0871200-03	Rice	nucleus	53.81	44.64
KXG33778	Sorghum	nucleus	52.19	43.55
Zm00001d012260_P001	Maize	nucleus	52.19	43.55
TraesCS3A01G381900.1	Wheat	nucleus	51.96	43.44
TraesCS3B01G414500.1	Wheat	nucleus	51.73	43.08
TraesCS3D01G375000.1	Wheat	nucleus	51.5	42.88
Zm00001d042686_P001	Maize	nucleus	50.35	42.08
PGSC0003DMT400001105	Potato	nucleus	27.02	36.79
PGSC0003DMT400017556	Potato	nucleus	12.01	36.36
PGSC0003DMT400008898	Potato	extracellular, nucleus	30.25	35.6
PGSC0003DMT400096573	Potato	cytosol, mitochondrion, nucleus, peroxisome	11.78	33.33
PGSC0003DMT400077822	Potato	nucleus	16.63	22.64
PGSC0003DMT400035408	Potato	nucleus	18.01	22.48
PGSC0003DMT400018308	Potato	nucleus, plastid	16.4	21.78
PGSC0003DMT400079144	Potato	nucleus	15.7	14.26

Protein Annotations

EntrezGene:102596245	MapMan:15.5.15	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009987
GO:GO:0010044	GO:GO:0010447	InterPro:IPR013087	UniProt:M1CGN8	EnsemblPlantsGene:PGSC0003DMG400026081	PGSC:PGSC0003DMG400026081
EnsemblPlants:PGSC0003DMT400067092	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR10593	PANTHER:PTHR10593:SF71	SMART:SM00355
SUPFAM:SSF57667	UniParc:UPI00029516EC	RefSeq:XP_006353630.1	RefSeq:XP_006353631.1	RefSeq:XP_015166898.1	InterPro:Znf_C2H2_sf
InterPro:Znf_C2H2_type	SEG:seg	:	:	:	:

Description

C2H2L domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400026081]

Coordinates

chr6:-:46408470..46411013

Molecular Weight (calculated)

48346.7 Da

IEP (calculated)

7.014

GRAVY (calculated)

-0.730

Length

433 amino acids

Sequence
(BLAST)

001: MEQQANQSSD NHDVTGIKEW DPRAMLRSMS FLEQKIHQLR ELVRIIVDHR SLAGIQGSDL SIQQQQLITT DLTSIIIQLI STAGSLLPTV KHQANPPTKQ
101: LEQFGGASVP SETGTNVGAL TCNVNATKAK DQTNHVDQMG DCSVDEHEAK DEDEPHEEEN LPPGSYEILQ LEKEEILAPH THFCTICGKG FKRDANLRMH
201: MRGHGDEYKT SAALAKPHKD SSSGTTLIKR YSCPCVGCKR NKEHKKFQPL KSILCVKNHY RRTHCEKRYA CSRCNLKKFS VIADLRTHEK HCGKDKWLCS
301: CGTTFSRKDK LFGHISLFQG HTPAIPLDET KGFAPTSDQG QTNDATTKAG NIDFEVNVQN DSGFQNTMNV KGSTDNPDSY FSSLNFETSK LNELQEFPQP
401: PFEDQENSFS FLLSGSCNYP RKAGKNIGST TLE

Best Arabidopsis Sequence Match ( AT1G34370.2 )
(BLAST)

001: METEDDLCNT NWGSSSSKSR EPGSSDCGNS TFAGFTSQQK WEDASILDYE MGVEPGLQES IQANVDFLQG VRAQAWDPRT MLSNLSFMEQ KIHQLQDLVH
101: LLVGRGGQLQ GRQDELAAQQ QQLITTDLTS IIIQLISTAG SLLPSVKHNM STAPGPFTGQ PGSAVFPYVR EANNVASQSQ NNNNCGAREF DLPKPVLVDE
201: REGHVVEEHE MKDEDDVEEG ENLPPGSYEI LQLEKEEILA PHTHFCTICG KGFKRDANLR MHMRGHGDEY KTAAALAKPN KESVPGSEPM LIKRYSCPFL
301: GCKRNKEHKK FQPLKTILCV KNHYKRTHCD KSFTCSRCHT KKFSVIADLK THEKHCGKNK WLCSCGTTFS RKDKLFGHIA LFQGHTPAIP LEETKPSAST
401: STQRGSSEGG NNNQGMVGFN LGSASNANQE TTQPGMTDGR ICFEESFSPM NFDTCNFGGF HEFPRLMFDD SESSFQMLIA NACGFSPRNV GESVSDTSL

Arabidopsis Description

STOP1Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8N5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.