Factsheet for PGSC0003DMT400079144

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g074320.1.1	Tomato	nucleus	49.9	87.18
PGSC0003DMT400017556	Potato	nucleus	20.96	69.93
KRH18924	Soybean	nucleus	31.24	62.87
PGSC0003DMT400096573	Potato	cytosol, mitochondrion, nucleus, peroxisome	20.13	62.75
KRH16750	Soybean	nucleus	31.24	59.84
VIT_18s0001g05860.t01	Wine grape	nucleus	34.17	59.71
CDY12025	Canola	nucleus	32.7	54.36
Bra028067.1-P	Field mustard	nucleus	32.49	54.01
CDY03134	Canola	nucleus	32.08	53.31
AT1G34790.1	Thale cress	nucleus	32.91	51.82
PGSC0003DMT400077822	Potato	nucleus	30.61	45.91
PGSC0003DMT400018308	Potato	nucleus, plastid	30.19	44.17
PGSC0003DMT400035408	Potato	nucleus	29.35	40.35
PGSC0003DMT400001105	Potato	nucleus	13.63	20.44
PGSC0003DMT400008898	Potato	extracellular, nucleus	12.58	16.3
PGSC0003DMT400067092	Potato	nucleus	14.26	15.7
PGSC0003DMT400023881	Potato	nucleus	14.26	13.26

Protein Annotations

EntrezGene:102591750	MapMan:15.5.15	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR013087	UniProt:M1D1B4	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	EnsemblPlantsGene:PGSC0003DMG400030803	PGSC:PGSC0003DMG400030803	EnsemblPlants:PGSC0003DMT400079144	ScanProsite:PS00028	PFscan:PS50102
PFscan:PS50157	PANTHER:PTHR10593	PANTHER:PTHR10593:SF69	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00355
SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF57667	InterPro:TT1-like	UniParc:UPI0002962957	InterPro:Znf_C2H2_sf
InterPro:Znf_C2H2_type	SEG:seg	:	:	:	:

Description

TRANSPARENT TESTA 1 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030803]

Coordinates

chr4:+:63792257..63801844

Molecular Weight (calculated)

52690.8 Da

IEP (calculated)

9.395

GRAVY (calculated)

-0.732

Length

477 amino acids

Sequence
(BLAST)

001: MAYQHYRSPF GDTTYTKVFV GGLAWETPTD VMRRYFEQFG EILEAVIITD KNTGKSKGYG FVTYRDPESA RRACDNPNPV IDGRRANCNI ASLGRPRPSP
101: PRGRGQGGNP YQGGGIPQGA SSSSYSGVAG AAAAPLPLHP PPATPMIYSP YGYATYPPEY YHQGSRGTFS AAATGHHHQR FQGPTASYLY YPTTTTAAAT
201: AHHLPADAAS FTPPPPPLLQ HPPPPHAAPT RPSPTTDKTQ NAFEFLSLSQ PSNQNIEKMS NYQENPNWEN EDDVTVALHI GLPNSSNNNI PIDHNKSDGN
301: IIGAATQYWI PTPSQILVGF THFSCHICHK TFNRYNNLQM HMWGHGSQYR KGPESLKGTQ PKAMLGIPCY CCEEGCKNNI NHARAKPLKD FRTLQTHYKR
401: KHGTKRFACR KCGKCLAVKG DWRTHEKNCG KRWLCVCGSD FKHKRSLKDH IASFGQGHGP SNSFDGVEVQ RSGNFFI

Best Arabidopsis Sequence Match ( AT1G34790.1 )
(BLAST)

001: MESPPLYEIS SSSSSEKPRH HFQSLDLFPN LNQNSCINNT LIEPLPLIDR INLNSNLDLN PNPLYAEEGE QEEEEEEEED REVDVDLHIG LPGFGKPSND
101: AKQLKKRNGK EIATYDAGKG IENELSGKAY WIPAPEQILI GFTHFSCHVC FKTFNRYNNL QMHMWGHGSQ YRKGPESLKG TQPRAMLGIP CYCCVEGCRN
201: HIDHPRSKPL KDFRTLQTHY KRKHGHKPFS CRLCGKLLAV KGDWRTHEKN CGKRWVCVCG SDFKHKRSLK DHVKAFGSGH GPYPTGLFEE QASNSSVSET
301: LFF

Arabidopsis Description

TT1Protein TRANSPARENT TESTA 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWG3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.