Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028067.1-P | Field mustard | nucleus | 79.21 | 83.62 |
| CDY03134 | Canola | nucleus | 78.88 | 83.28 |
| CDY12025 | Canola | nucleus | 78.88 | 83.28 |
| KRH18924 | Soybean | nucleus | 47.85 | 61.18 |
| VIT_18s0001g05860.t01 | Wine grape | nucleus | 55.12 | 61.17 |
| KRH16750 | Soybean | nucleus | 48.18 | 58.63 |
| Solyc04g074320.1.1 | Tomato | nucleus | 52.48 | 58.24 |
| AT1G13290.1 | Thale cress | nucleus | 45.21 | 45.36 |
| AT1G51220.1 | Thale cress | nucleus | 47.19 | 42.43 |
| AT1G08290.1 | Thale cress | nucleus | 44.88 | 40.36 |
| AT3G57670.1 | Thale cress | nucleus | 48.18 | 38.12 |
| AT3G20880.1 | Thale cress | nucleus | 46.86 | 34.47 |
| PGSC0003DMT400079144 | Potato | nucleus | 51.82 | 32.91 |
| AT5G22890.1 | Thale cress | nucleus | 22.11 | 17.96 |
| AT1G34370.1 | Thale cress | nucleus | 23.43 | 14.23 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | EntrezGene:840386 | ProteinID:AAL66405.1 | ProteinID:AAL66407.1 | EMBL:AB493495 |
| EMBL:AC018460 | ProteinID:AEE31740.1 | EMBL:AF190298 | EMBL:AJ318491 | ArrayExpress:AT1G34790 | EnsemblPlantsGene:AT1G34790 |
| RefSeq:AT1G34790 | TAIR:AT1G34790 | RefSeq:AT1G34790-TAIR-G | EnsemblPlants:AT1G34790.1 | TAIR:AT1G34790.1 | Unigene:At.39652 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009813 | GO:GO:0009987 | GO:GO:0046872 | InterPro:IPR013087 |
| RefSeq:NP_174737.2 | PO:PO:0009010 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF69 |
| UniProt:Q8VWG3 | SUPFAM:SSF57667 | Symbol:TT1 | InterPro:TT1-like | UniParc:UPI0000036BBB | InterPro:Znf_C2H2_sf |
| InterPro:Znf_C2H2_type | SEG:seg | : | : | : | : |
Description
TT1Protein TRANSPARENT TESTA 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWG3]
Coordinates
chr1:+:12763902..12765686
Molecular Weight (calculated)
34513.7 Da
IEP (calculated)
7.548
GRAVY (calculated)
-0.791
Length
303 amino acids
Sequence
(BLAST)
(BLAST)
001: MESPPLYEIS SSSSSEKPRH HFQSLDLFPN LNQNSCINNT LIEPLPLIDR INLNSNLDLN PNPLYAEEGE QEEEEEEEED REVDVDLHIG LPGFGKPSND
101: AKQLKKRNGK EIATYDAGKG IENELSGKAY WIPAPEQILI GFTHFSCHVC FKTFNRYNNL QMHMWGHGSQ YRKGPESLKG TQPRAMLGIP CYCCVEGCRN
201: HIDHPRSKPL KDFRTLQTHY KRKHGHKPFS CRLCGKLLAV KGDWRTHEKN CGKRWVCVCG SDFKHKRSLK DHVKAFGSGH GPYPTGLFEE QASNSSVSET
301: LFF
101: AKQLKKRNGK EIATYDAGKG IENELSGKAY WIPAPEQILI GFTHFSCHVC FKTFNRYNNL QMHMWGHGSQ YRKGPESLKG TQPRAMLGIP CYCCVEGCRN
201: HIDHPRSKPL KDFRTLQTHY KRKHGHKPFS CRLCGKLLAV KGDWRTHEKN CGKRWVCVCG SDFKHKRSLK DHVKAFGSGH GPYPTGLFEE QASNSSVSET
301: LFF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.