Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67704 | Canola | nucleus | 59.53 | 92.68 |
| Bra003295.1-P | Field mustard | nucleus | 59.53 | 92.68 |
| CDY57608 | Canola | nucleus | 57.7 | 92.08 |
| CDY06083 | Canola | nucleus | 89.82 | 91.98 |
| CDX72006 | Canola | nucleus | 89.3 | 91.69 |
| Bra007346.1-P | Field mustard | nucleus | 72.58 | 90.55 |
| VIT_08s0007g08070.t01 | Wine grape | nucleus | 63.45 | 70.43 |
| PGSC0003DMT400077822 | Potato | nucleus | 55.61 | 66.98 |
| GSMUA_AchrUn_... | Banana | nucleus | 52.48 | 61.47 |
| KRH71956 | Soybean | nucleus, plastid | 59.01 | 60.92 |
| KRH33045 | Soybean | nucleus, plastid | 58.49 | 58.03 |
| AT1G51220.1 | Thale cress | nucleus | 50.91 | 57.86 |
| TraesCS7A01G404400.1 | Wheat | nucleus | 54.05 | 56.25 |
| TraesCS7B01G304000.1 | Wheat | nucleus | 54.05 | 55.95 |
| TraesCS7D01G397800.1 | Wheat | nucleus | 53.52 | 55.41 |
| Zm00001d036812_P001 | Maize | nucleus | 54.83 | 53.98 |
| EER88644 | Sorghum | nucleus, plastid | 56.66 | 53.71 |
| GSMUA_Achr1P16530_001 | Banana | nucleus | 50.13 | 53.19 |
| AT1G13290.1 | Thale cress | nucleus | 41.51 | 52.65 |
| Zm00001d046774_P001 | Maize | nucleus | 54.57 | 52.51 |
| Solyc03g059270.2.1 | Tomato | nucleus | 43.34 | 48.54 |
| AT3G20880.1 | Thale cress | nucleus | 51.96 | 48.3 |
| AT1G34790.1 | Thale cress | nucleus | 38.12 | 48.18 |
| Os06t0612300-01 | Rice | endoplasmic reticulum, vacuole | 54.57 | 46.97 |
| AT1G08290.1 | Thale cress | nucleus | 38.9 | 44.21 |
| AT5G22890.1 | Thale cress | nucleus | 19.32 | 19.84 |
| AT1G34370.1 | Thale cress | nucleus | 20.1 | 15.43 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | EntrezGene:824936 | UniProt:A0A178VLW5 | ProteinID:AEE79685.1 | EMBL:AF254447 |
| EMBL:AK228585 | ArrayExpress:AT3G57670 | EnsemblPlantsGene:AT3G57670 | RefSeq:AT3G57670 | TAIR:AT3G57670 | RefSeq:AT3G57670-TAIR-G |
| EnsemblPlants:AT3G57670.1 | TAIR:AT3G57670.1 | EMBL:BT005772 | EMBL:BT021089 | ProteinID:CAB41188.1 | GO:GO:0000003 |
| GO:GO:0001709 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009653 | GO:GO:0009791 |
| GO:GO:0009856 | GO:GO:0009860 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0010468 | GO:GO:0010500 |
| GO:GO:0016043 | GO:GO:0016049 | GO:GO:0030154 | GO:GO:0040007 | GO:GO:0046872 | GO:GO:1990058 |
| InterPro:IPR013087 | RefSeq:NP_191326.1 | Symbol:NTT | ProteinID:OAP06053.1 | PO:PO:0000037 | PO:PO:0000293 |
| PO:PO:0001078 | PO:PO:0001185 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020003 | PO:PO:0020006 |
| PO:PO:0020102 | PO:PO:0025022 | PO:PO:0025268 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR10593 |
| PANTHER:PTHR10593:SF98 | UniProt:Q9SVY1 | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI00000A5920 | InterPro:Znf_C2H2_sf |
| InterPro:Znf_C2H2_type | SEG:seg | : | : | : | : |
Description
WIP2WIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VLW5]
Coordinates
chr3:+:21370757..21373591
Molecular Weight (calculated)
43339.4 Da
IEP (calculated)
6.872
GRAVY (calculated)
-0.972
Length
383 amino acids
Sequence
(BLAST)
(BLAST)
001: MTDPYSNFFT DWFKSNPFHH YPNSSTNPSP HPLPPVTPPS SFFFFPQSGD LRRPPPPPTP PPSPPLREAL PLLSLSPANK QQDHHHNHDH LIQEPPSTSM
101: DVDYDHHHQD DHHNLDDDDH DVTVALHIGL PSPSAQEMAS LLMMSSSSSS SRTTHHHEDM NHKKDLDHEY SHGAVGGGED DDEDSVGGDG GCRISRLNKG
201: QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP
301: FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS LKDHIKAFGN GHGAYGIDGF DEEDEPASEV EQLDNDHESM QSK
101: DVDYDHHHQD DHHNLDDDDH DVTVALHIGL PSPSAQEMAS LLMMSSSSSS SRTTHHHEDM NHKKDLDHEY SHGAVGGGED DDEDSVGGDG GCRISRLNKG
201: QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP
301: FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS LKDHIKAFGN GHGAYGIDGF DEEDEPASEV EQLDNDHESM QSK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.