Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 2
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G57670.1 | KRG99225 | AT1G10470.1 | 18642946 |
| AT3G57670.1 | KRH45761 | AT1G10470.1 | 18642946 |
| AT3G57670.1 | KRH69443 | AT1G10470.1 | 18642946 |
| AT3G57670.1 | KRH74701 | AT1G10470.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH33045 | Soybean | nucleus, plastid | 93.53 | 89.9 |
| KRG95308 | Soybean | nucleus, plastid | 69.54 | 73.93 |
| KRH25207 | Soybean | nucleus | 28.84 | 72.3 |
| KRH66988 | Soybean | nucleus | 69.54 | 72.07 |
| PGSC0003DMT400077822 | Potato | nucleus | 56.6 | 66.04 |
| GSMUA_AchrUn_... | Banana | nucleus | 55.53 | 63.0 |
| CDX88959 | Canola | nucleus | 59.3 | 60.44 |
| Bra014612.1-P | Field mustard | nucleus, plastid | 59.03 | 60.16 |
| KRH10191 | Soybean | nucleus, plastid | 54.99 | 59.13 |
| KRH18924 | Soybean | nucleus | 37.74 | 59.07 |
| AT3G57670.1 | Thale cress | nucleus | 60.92 | 59.01 |
| KRH23146 | Soybean | nucleus, plastid | 54.45 | 57.71 |
| KRH29701 | Soybean | nucleus | 52.02 | 56.6 |
| KRH24697 | Soybean | nucleus, plastid | 51.75 | 56.3 |
| KRH16750 | Soybean | nucleus | 37.74 | 56.22 |
| KRH27491 | Soybean | nucleus, plastid | 52.02 | 54.83 |
| TraesCS7A01G404400.1 | Wheat | nucleus | 53.64 | 54.08 |
| TraesCS7B01G304000.1 | Wheat | nucleus | 53.64 | 53.78 |
| KRH43510 | Soybean | nucleus, plastid | 50.13 | 53.76 |
| TraesCS7D01G397800.1 | Wheat | nucleus | 53.37 | 53.51 |
| KRH20837 | Soybean | nucleus, plastid | 51.48 | 53.5 |
| KRH34760 | Soybean | nucleus | 39.35 | 53.48 |
| GSMUA_Achr1P16530_001 | Banana | nucleus | 52.02 | 53.46 |
| KRG92027 | Soybean | nucleus | 39.08 | 52.92 |
| KRH13927 | Soybean | nucleus, plastid | 48.25 | 52.34 |
| Zm00001d036812_P001 | Maize | nucleus | 53.91 | 51.41 |
| Zm00001d046774_P001 | Maize | nucleus | 54.45 | 50.75 |
| EER88644 | Sorghum | nucleus, plastid | 54.45 | 50.0 |
| KRH22690 | Soybean | nucleus | 41.78 | 48.59 |
| KRH26622 | Soybean | nucleus | 41.78 | 48.29 |
| Solyc03g059270.2.1 | Tomato | nucleus | 43.94 | 47.66 |
| KRH30442 | Soybean | nucleus | 42.32 | 47.58 |
| Os06t0612300-01 | Rice | endoplasmic reticulum, vacuole | 55.26 | 46.07 |
| KRH75477 | Soybean | nucleus | 40.97 | 45.78 |
| KRH70598 | Soybean | nucleus | 40.7 | 45.21 |
| KRH25208 | Soybean | nucleus, plastid | 14.02 | 29.71 |
| KRH22822 | Soybean | plastid | 17.79 | 23.74 |
| KRH59322 | Soybean | nucleus | 18.6 | 21.1 |
| KRH43171 | Soybean | nucleus, plastid | 17.79 | 20.75 |
| KRG97571 | Soybean | nucleus, plastid | 18.87 | 20.71 |
| KRH31302 | Soybean | nucleus, plastid | 18.6 | 18.96 |
| KRH25115 | Soybean | nucleus | 20.22 | 18.94 |
| KRH30553 | Soybean | nucleus, plastid | 20.22 | 18.29 |
| KRH26538 | Soybean | nucleus, plastid | 19.68 | 17.8 |
| KRH34957 | Soybean | nucleus, plastid | 22.91 | 16.77 |
| KRG91822 | Soybean | nucleus, plastid | 22.91 | 16.7 |
| KRH08551 | Soybean | nucleus, plastid | 23.45 | 16.7 |
Protein Annotations
| EntrezGene:100783088 | MapMan:15.5.15 | Gene3D:3.30.160.60 | EMBL:ACUP02001123 | ncoils:Coil | EnsemblPlantsGene:GLYMA_02G181100 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | UniProt:I1JG69 | InterPro:IPR013087 | EnsemblPlants:KRH71956 |
| ProteinID:KRH71956 | ProteinID:KRH71956.1 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF98 |
| SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI0002337238 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg |
Description
hypothetical protein
Coordinates
chr2:-:30906665..30909346
Molecular Weight (calculated)
41882.4 Da
IEP (calculated)
6.535
GRAVY (calculated)
-0.902
Length
371 amino acids
Sequence
(BLAST)
(BLAST)
001: MADPYSNFFS PGSFFHHYPS PNPSPHHHPY AHNFLNQNGS NINNHNTFFH FHHFQTTICS SSPPSPPLRE ALPLLTLSPR NEEEQEEDDQ DQDQEILQEN
101: ICTAMDVEEN YNNRTLHLHP KGEEQDQEDT DESVTVALHI GLPSPSAAEI ASVLSSAACS TDKEQQGGHG VGNNNSNNGS EDFSSSGFLS NRLNKGQYWI
201: PTPSQILIGP TQFSCPVCCK TFNRYNNMQM HMWGHGSQYR KGPESLRGTQ PTGMLRLPCY CCSPGCRNNI DHPRAKPLKD FRTLQTHYKR KHGIKPFMCR
301: KCGKAFAVRG DWRTHEKNCG KLWYCICGSD FKHKRSLKDH IKAFGSGHAA YGIDGFEEEE EPASEVEQDN D
101: ICTAMDVEEN YNNRTLHLHP KGEEQDQEDT DESVTVALHI GLPSPSAAEI ASVLSSAACS TDKEQQGGHG VGNNNSNNGS EDFSSSGFLS NRLNKGQYWI
201: PTPSQILIGP TQFSCPVCCK TFNRYNNMQM HMWGHGSQYR KGPESLRGTQ PTGMLRLPCY CCSPGCRNNI DHPRAKPLKD FRTLQTHYKR KHGIKPFMCR
301: KCGKAFAVRG DWRTHEKNCG KLWYCICGSD FKHKRSLKDH IKAFGSGHAA YGIDGFEEEE EPASEVEQDN D
001: MTDPYSNFFT DWFKSNPFHH YPNSSTNPSP HPLPPVTPPS SFFFFPQSGD LRRPPPPPTP PPSPPLREAL PLLSLSPANK QQDHHHNHDH LIQEPPSTSM
101: DVDYDHHHQD DHHNLDDDDH DVTVALHIGL PSPSAQEMAS LLMMSSSSSS SRTTHHHEDM NHKKDLDHEY SHGAVGGGED DDEDSVGGDG GCRISRLNKG
201: QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP
301: FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS LKDHIKAFGN GHGAYGIDGF DEEDEPASEV EQLDNDHESM QSK
101: DVDYDHHHQD DHHNLDDDDH DVTVALHIGL PSPSAQEMAS LLMMSSSSSS SRTTHHHEDM NHKKDLDHEY SHGAVGGGED DDEDSVGGDG GCRISRLNKG
201: QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP
301: FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS LKDHIKAFGN GHGAYGIDGF DEEDEPASEV EQLDNDHESM QSK
Arabidopsis Description
WIP2WIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VLW5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.