Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P11870_001 | Banana | nucleus | 75.23 | 72.35 |
| GSMUA_Achr3P03850_001 | Banana | plastid | 66.06 | 66.87 |
| CDY57608 | Canola | nucleus | 48.93 | 66.67 |
| Bra003295.1-P | Field mustard | nucleus | 49.24 | 65.45 |
| CDX67704 | Canola | nucleus | 49.24 | 65.45 |
| GSMUA_Achr9P12600_001 | Banana | nucleus | 61.77 | 64.95 |
| GSMUA_AchrUn_... | Banana | plastid | 63.3 | 63.3 |
| GSMUA_Achr4P01560_001 | Banana | nucleus | 61.77 | 62.73 |
| GSMUA_Achr6P03470_001 | Banana | nucleus | 61.16 | 62.7 |
| GSMUA_Achr8P25650_001 | Banana | nucleus, plastid | 56.88 | 62.0 |
| PGSC0003DMT400077822 | Potato | nucleus | 59.33 | 61.01 |
| VIT_08s0007g08070.t01 | Wine grape | nucleus | 63.61 | 60.29 |
| KRG95308 | Soybean | nucleus, plastid | 63.91 | 59.89 |
| GSMUA_AchrUn_... | Banana | nucleus | 62.08 | 59.01 |
| KRH66988 | Soybean | nucleus | 64.22 | 58.66 |
| GSMUA_Achr3P11050_001 | Banana | cytosol, nucleus, plastid | 61.16 | 58.65 |
| Bra007346.1-P | Field mustard | nucleus | 53.82 | 57.33 |
| GSMUA_Achr11P... | Banana | nucleus | 39.14 | 57.14 |
| GSMUA_Achr4P06350_001 | Banana | nucleus | 54.13 | 57.1 |
| GSMUA_Achr1P16530_001 | Banana | nucleus | 62.69 | 56.79 |
| GSMUA_Achr9P22340_001 | Banana | nucleus | 63.3 | 56.71 |
| KRH71956 | Soybean | nucleus, plastid | 63.0 | 55.53 |
| CDX88959 | Canola | nucleus | 60.86 | 54.67 |
| Bra014612.1-P | Field mustard | nucleus, plastid | 60.55 | 54.4 |
| CDY06083 | Canola | nucleus | 62.08 | 54.28 |
| CDX72006 | Canola | nucleus | 61.77 | 54.16 |
| KRH33045 | Soybean | nucleus, plastid | 63.0 | 53.37 |
| GSMUA_Achr6P21380_001 | Banana | nucleus | 38.23 | 52.74 |
| AT3G57670.1 | Thale cress | nucleus | 61.47 | 52.48 |
| GSMUA_Achr5P26210_001 | Banana | nucleus | 41.59 | 48.75 |
| GSMUA_Achr6P01410_001 | Banana | nucleus | 40.67 | 47.33 |
| Solyc03g059270.2.1 | Tomato | nucleus | 45.87 | 43.86 |
| GSMUA_Achr5P09960_001 | Banana | endoplasmic reticulum, nucleus, plastid | 42.2 | 32.02 |
| GSMUA_Achr1P15330_001 | Banana | cytosol | 19.88 | 23.13 |
| GSMUA_Achr11P... | Banana | nucleus | 21.1 | 20.29 |
| GSMUA_Achr10P... | Banana | nucleus | 20.8 | 19.37 |
| GSMUA_Achr10P... | Banana | nucleus | 23.24 | 19.1 |
| GSMUA_Achr5P01170_001 | Banana | nucleus | 21.71 | 18.07 |
| GSMUA_Achr6P18840_001 | Banana | nucleus | 22.02 | 17.43 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP20320_001 | EnsemblPlants:GSMUA_AchrUn_randomT20320_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG20320_001 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF98 |
| PFscan:PS50157 | ScanProsite:PS00028 | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI000294ADE7 | UniProt:M0UAU1 |
| MapMan:15.5.15 | : | : | : | : | : |
Description
Whole genome shotgun sequence of line PN40024, scaffold_7.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG20320_001]
Coordinates
chrchrUn_random:-:98886469..98888624
Molecular Weight (calculated)
37188.0 Da
IEP (calculated)
8.481
GRAVY (calculated)
-0.652
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MADSDRYSNL FKGSLNHYGF PSHTSATHSL YAAFTNYTYV QSSPASPPLR EALPLLSLSP TRHGHQQEED SNWLSRGDSV EEEAVSVALH IGLPSPREAD
101: LVSRVSSTSL TRGQYWIPTP SQILIGPTQF PCPVCCKTFN RYNNMQMHMW GHGSQYRKGP ESLKGTQPTG MLRLPCYCCA PGCRSNIDHP RSKPLKDFRT
201: LQTHYKRKHG IKPFMCRKCG KAFAVRGDWR THEKNCGKLW YCICGSDFKH KRSLKDHIKA FGRGHAPYGL DCFDEEDEPS SEIEQDSDHH HQVKQLDERF
301: IVSDTRINVD AGLLMLSYLM FFVGRTQ
101: LVSRVSSTSL TRGQYWIPTP SQILIGPTQF PCPVCCKTFN RYNNMQMHMW GHGSQYRKGP ESLKGTQPTG MLRLPCYCCA PGCRSNIDHP RSKPLKDFRT
201: LQTHYKRKHG IKPFMCRKCG KAFAVRGDWR THEKNCGKLW YCICGSDFKH KRSLKDHIKA FGRGHAPYGL DCFDEEDEPS SEIEQDSDHH HQVKQLDERF
301: IVSDTRINVD AGLLMLSYLM FFVGRTQ
001: MTDPYSNFFT DWFKSNPFHH YPNSSTNPSP HPLPPVTPPS SFFFFPQSGD LRRPPPPPTP PPSPPLREAL PLLSLSPANK QQDHHHNHDH LIQEPPSTSM
101: DVDYDHHHQD DHHNLDDDDH DVTVALHIGL PSPSAQEMAS LLMMSSSSSS SRTTHHHEDM NHKKDLDHEY SHGAVGGGED DDEDSVGGDG GCRISRLNKG
201: QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP
301: FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS LKDHIKAFGN GHGAYGIDGF DEEDEPASEV EQLDNDHESM QSK
101: DVDYDHHHQD DHHNLDDDDH DVTVALHIGL PSPSAQEMAS LLMMSSSSSS SRTTHHHEDM NHKKDLDHEY SHGAVGGGED DDEDSVGGDG GCRISRLNKG
201: QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP
301: FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS LKDHIKAFGN GHGAYGIDGF DEEDEPASEV EQLDNDHESM QSK
Arabidopsis Description
WIP2WIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VLW5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.