Factsheet for GSMUA_Achr5P01170_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P18840_001	Banana	nucleus	76.08	72.4
GSMUA_Achr10P...	Banana	nucleus	52.16	51.51
Solyc06g065440.1.1	Tomato	cytosol	44.78	50.14
CDY12041	Canola	nucleus	50.38	48.41
Bra040971.1-P	Field mustard	nucleus	51.65	47.65
CDY03148	Canola	nucleus	51.4	46.87
Os01t0871200-03	Rice	nucleus	61.07	45.98
PGSC0003DMT400067092	Potato	nucleus	50.64	45.96
KXG33778	Sorghum	nucleus	60.56	45.86
Zm00001d012260_P001	Maize	nucleus	60.05	45.47
VIT_18s0072g00840.t01	Wine grape	nucleus	60.56	45.16
TraesCS3D01G375000.1	Wheat	nucleus	59.03	44.62
TraesCS3A01G381900.1	Wheat	nucleus	58.52	44.4
Solyc11g017140.1.1	Tomato	nucleus	54.71	44.33
TraesCS3B01G414500.1	Wheat	nucleus	58.27	44.04
CDY46467	Canola	nucleus	54.45	43.85
Zm00001d042686_P001	Maize	nucleus	57.76	43.82
AT1G34370.1	Thale cress	nucleus	55.22	43.49
Bra036750.1-P	Field mustard	nucleus	54.2	43.38
CDX91774	Canola	nucleus	54.45	43.15
KRH34957	Soybean	nucleus, plastid	54.45	42.21
KRH08551	Soybean	nucleus, plastid	55.47	41.84
KRG91822	Soybean	nucleus, plastid	53.94	41.65
PGSC0003DMT400023881	Potato	nucleus	54.2	41.52
GSMUA_Achr1P15330_001	Banana	cytosol	25.7	35.94
GSMUA_Achr11P...	Banana	nucleus	26.97	31.18
GSMUA_Achr10P...	Banana	nucleus	27.74	31.05
GSMUA_Achr11P...	Banana	nucleus	16.03	28.12
GSMUA_Achr6P21380_001	Banana	nucleus	16.03	26.58
GSMUA_Achr5P26210_001	Banana	nucleus	17.05	24.01
GSMUA_Achr6P01410_001	Banana	nucleus	16.79	23.49
GSMUA_Achr8P25650_001	Banana	nucleus, plastid	17.81	23.33
GSMUA_Achr9P12600_001	Banana	nucleus	17.56	22.19
GSMUA_Achr3P03850_001	Banana	plastid	18.07	21.98
GSMUA_Achr6P03470_001	Banana	nucleus	17.81	21.94
GSMUA_AchrUn_...	Banana	nucleus	18.07	21.71
GSMUA_Achr3P11870_001	Banana	nucleus	18.58	21.47
GSMUA_Achr4P01560_001	Banana	nucleus	17.3	21.12
GSMUA_AchrUn_...	Banana	nucleus	18.32	20.93
GSMUA_Achr3P11050_001	Banana	cytosol, nucleus, plastid	18.07	20.82
GSMUA_AchrUn_...	Banana	plastid	17.3	20.8
GSMUA_Achr1P16530_001	Banana	nucleus	18.32	19.94
GSMUA_Achr9P22340_001	Banana	nucleus	17.81	19.18
GSMUA_Achr4P06350_001	Banana	nucleus	14.25	18.06
GSMUA_Achr5P09960_001	Banana	endoplasmic reticulum, nucleus, plastid	16.79	15.31

Protein Annotations

EnsemblPlants:GSMUA_Achr5P01170_001	EnsemblPlants:GSMUA_Achr5T01170_001	EnsemblPlantsGene:GSMUA_Achr5G01170_001	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF71
PFscan:PS50157	ScanProsite:PS00028	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI00029504A7	UniProt:M0SUP6
MapMan:15.5.15	:	:	:	:	:

Description

Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Source:GMGC_GENE;Acc:GSMUA_Achr5G01170_001]

Coordinates

chr5:+:673481..675520

Molecular Weight (calculated)

43688.1 Da

IEP (calculated)

7.800

GRAVY (calculated)

-0.371

Length

393 amino acids

Sequence
(BLAST)

001: MLSNLSFLEQ KIHQVQDIVR SIISQEGRAN ELAAQQQLVT ADLTYIIIQL ISTAGTLLPN IKNALLSATP PVAQTDHDIK DYDDGMDGEN LPPGSYEVLQ
101: LEKEEILAPH THFCLICGKG FKRDANLRMH MRGHGDEYKT AAALAKPSKE ASSEPAIIRR YSCPFVGCKR NKEHKKFQPL KTILCVKNHY KRSHCDKSYT
201: CSRCKTKKFS VIADLKTHEK HCGRDKWICS CGTTFSRKDK LFGHVALFQG HTPAIPMDDA KVSGMSDHVQ VGETTNGMVA NMGYNFSGNA SDDAQSLDIK
301: DVDDGQGYFS PMNFDACNFG GLDEFPRSAY DVSESPFSFL STGTCTNIFL FACGGHYTSF PKQKKKTIYD LLKGSSLFRS LPTLFIETCA FIN

Best Arabidopsis Sequence Match ( AT1G34370.2 )
(BLAST)

001: METEDDLCNT NWGSSSSKSR EPGSSDCGNS TFAGFTSQQK WEDASILDYE MGVEPGLQES IQANVDFLQG VRAQAWDPRT MLSNLSFMEQ KIHQLQDLVH
101: LLVGRGGQLQ GRQDELAAQQ QQLITTDLTS IIIQLISTAG SLLPSVKHNM STAPGPFTGQ PGSAVFPYVR EANNVASQSQ NNNNCGAREF DLPKPVLVDE
201: REGHVVEEHE MKDEDDVEEG ENLPPGSYEI LQLEKEEILA PHTHFCTICG KGFKRDANLR MHMRGHGDEY KTAAALAKPN KESVPGSEPM LIKRYSCPFL
301: GCKRNKEHKK FQPLKTILCV KNHYKRTHCD KSFTCSRCHT KKFSVIADLK THEKHCGKNK WLCSCGTTFS RKDKLFGHIA LFQGHTPAIP LEETKPSAST
401: STQRGSSEGG NNNQGMVGFN LGSASNANQE TTQPGMTDGR ICFEESFSPM NFDTCNFGGF HEFPRLMFDD SESSFQMLIA NACGFSPRNV GESVSDTSL

Arabidopsis Description

STOP1Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8N5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.