CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12041	Canola	nucleus	82.83	87.29
CDY46467	Canola	nucleus	82.83	73.16
CDX91774	Canola	nucleus	83.29	72.38
AT1G34370.1	Thale cress	nucleus	79.58	68.74
Solyc06g065440.1.1	Tomato	cytosol	46.87	57.55
PGSC0003DMT400067092	Potato	nucleus	51.74	51.5
GSMUA_Achr5P01170_001	Banana	nucleus	46.87	51.4
VIT_18s0072g00840.t01	Wine grape	nucleus	62.18	50.85
Solyc11g017140.1.1	Tomato	nucleus	56.38	50.1
PGSC0003DMT400023881	Potato	nucleus	57.08	47.95
GSMUA_Achr6P18840_001	Banana	nucleus	45.48	47.46
KRH08551	Soybean	nucleus, plastid	57.31	47.41
Zm00001d012260_P001	Maize	nucleus	51.97	43.16
KXG33778	Sorghum	nucleus	51.74	42.97
Os01t0871200-03	Rice	nucleus	51.74	42.72
Zm00001d042686_P001	Maize	nucleus	50.58	42.08
TraesCS3A01G381900.1	Wheat	nucleus	49.19	40.93
TraesCS3B01G414500.1	Wheat	nucleus	48.96	40.58
TraesCS3D01G375000.1	Wheat	nucleus	48.96	40.58
CDY09179	Canola	nucleus	27.38	36.42
CDY26965	Canola	nucleus	28.07	33.06
CDY69109	Canola	nucleus	28.07	32.53
CDY31715	Canola	nucleus	28.07	32.18
CDY26966	Canola	nucleus	28.07	32.18
CDX74505	Canola	nucleus	28.07	32.18
CDX98183	Canola	nucleus	28.07	32.18
CDY09178	Canola	nucleus	26.45	30.89
CDY57608	Canola	nucleus	16.47	29.58
CDX67704	Canola	nucleus	16.47	28.86
CDX93575	Canola	nucleus	18.33	23.44
CDX95075	Canola	nucleus	18.33	23.37
CDY06390	Canola	nucleus	18.1	23.35
CDY35565	Canola	nucleus	18.33	23.3
CDY22834	Canola	nucleus, plastid	18.1	23.08
CDY25224	Canola	nucleus	18.1	23.08
CDY12025	Canola	nucleus	15.31	23.0
CDY29624	Canola	nucleus	18.1	22.94
CDY19385	Canola	nucleus	16.01	22.7
CDX97995	Canola	nucleus	15.78	22.08
CDY03134	Canola	nucleus	14.62	21.95
CDY26642	Canola	nucleus	14.62	21.28
CDY27556	Canola	nucleus	17.63	21.23
CDY57920	Canola	nucleus	17.63	21.17
CDX72006	Canola	nucleus	17.87	20.64
CDX88959	Canola	nucleus	17.4	20.6
CDY06083	Canola	nucleus	17.87	20.59
CDY22690	Canola	nucleus	15.78	20.18
CDY06308	Canola	nucleus	15.78	20.18

Protein Annotations

EnsemblPlants:CDY03148	EnsemblPlantsGene:GSBRNA2T00115576001	Gene3D:3.30.160.60	GO:A0A078EU85	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF71
PFscan:PS50157	ProteinID:CDY03148	ProteinID:CDY03148.1	ScanProsite:PS00028	SEG:seg	SMART:SM00355
SUPFAM:SSF57667	UniParc:UPI0004EE2EF1	MapMan:15.5.15	:	:	:

Description

BnaC06g08250D

Coordinates

chrLK031940:-:1004958..1006719

Molecular Weight (calculated)

47416.8 Da

IEP (calculated)

6.771

GRAVY (calculated)

-0.598

Length

431 amino acids

Sequence
(BLAST)

001: METGEDDLCK NNWGSASILD YEMAREDEEE EPNLHVFKAS SSCQDNNNNG GQASVDFLQG VKAQAWDPRT MLCNLSFMEH KIHELQGLVH LILGRNGQLQ
101: DEQRQLVTAD LTSIIIQLIS TAGSLLPSVK HHNMSTTAPG SAFHEMKNED DAEEGENLPP GSYEIKQLEK EEILAPHTNF CTICGKGFKR DANLRMHMRG
201: HGDEYKTPAA LAKPTKETVP GSEQMLVKRY SCPFPGCKRN KDHKKFQPLK TILCVKNHYK RTHCDKSFTC SRCHTKKFSV IADLKTHEKH CGKNKWLCSC
301: GTTFSRKDKL FGHIALFQGH TPAIPLEETK PSAAASSQRG SSGCGNNNNN AGMVSFNLGS ATNANQETSQ PCFMDGKISF EESFSPLSSD TCNFGGFPRS
401: IFDDSFQMLI SSACGCSPIN GGDGSVSDTS V

Best Arabidopsis Sequence Match ( AT1G34370.2 )
(BLAST)

001: METEDDLCNT NWGSSSSKSR EPGSSDCGNS TFAGFTSQQK WEDASILDYE MGVEPGLQES IQANVDFLQG VRAQAWDPRT MLSNLSFMEQ KIHQLQDLVH
101: LLVGRGGQLQ GRQDELAAQQ QQLITTDLTS IIIQLISTAG SLLPSVKHNM STAPGPFTGQ PGSAVFPYVR EANNVASQSQ NNNNCGAREF DLPKPVLVDE
201: REGHVVEEHE MKDEDDVEEG ENLPPGSYEI LQLEKEEILA PHTHFCTICG KGFKRDANLR MHMRGHGDEY KTAAALAKPN KESVPGSEPM LIKRYSCPFL
301: GCKRNKEHKK FQPLKTILCV KNHYKRTHCD KSFTCSRCHT KKFSVIADLK THEKHCGKNK WLCSCGTTFS RKDKLFGHIA LFQGHTPAIP LEETKPSAST
401: STQRGSSEGG NNNQGMVGFN LGSASNANQE TTQPGMTDGR ICFEESFSPM NFDTCNFGGF HEFPRLMFDD SESSFQMLIA NACGFSPRNV GESVSDTSL

Arabidopsis Description

STOP1Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8N5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.