Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22834 | Canola | nucleus, plastid | 97.93 | 97.93 |
| Bra018902.1-P | Field mustard | plastid | 96.75 | 97.03 |
| CDY35565 | Canola | nucleus | 87.87 | 87.61 |
| CDY29624 | Canola | nucleus | 87.28 | 86.76 |
| AT1G51220.1 | Thale cress | nucleus | 84.91 | 85.16 |
| CDY06390 | Canola | nucleus | 67.16 | 67.96 |
| CDY27556 | Canola | nucleus | 71.01 | 67.04 |
| CDY57920 | Canola | nucleus | 70.71 | 66.57 |
| CDY57608 | Canola | nucleus | 45.56 | 64.17 |
| CDX67704 | Canola | nucleus | 46.15 | 63.41 |
| Solyc11g062060.1.1 | Tomato | nucleus | 47.63 | 61.69 |
| GSMUA_Achr9P12600_001 | Banana | nucleus | 53.85 | 58.52 |
| GSMUA_Achr3P03850_001 | Banana | plastid | 52.96 | 55.42 |
| GSMUA_Achr4P01560_001 | Banana | nucleus | 52.66 | 55.28 |
| VIT_06s0004g01870.t01 | Wine grape | nucleus | 54.14 | 54.79 |
| GSMUA_AchrUn_... | Banana | plastid | 52.37 | 54.13 |
| GSMUA_Achr6P03470_001 | Banana | nucleus | 50.89 | 53.92 |
| KRH10191 | Soybean | nucleus, plastid | 54.44 | 53.33 |
| GSMUA_Achr8P25650_001 | Banana | nucleus, plastid | 47.34 | 53.33 |
| PGSC0003DMT400035408 | Potato | nucleus | 54.44 | 53.03 |
| CDX88959 | Canola | nucleus | 57.1 | 53.02 |
| CDX72006 | Canola | nucleus | 58.28 | 52.81 |
| CDY06083 | Canola | nucleus | 57.99 | 52.41 |
| GSMUA_AchrUn_... | Banana | nucleus | 52.66 | 51.74 |
| KRH23146 | Soybean | nucleus, plastid | 52.96 | 51.14 |
| GSMUA_Achr3P11050_001 | Banana | cytosol, nucleus, plastid | 50.59 | 50.15 |
| KRH29701 | Soybean | nucleus | 50.3 | 49.85 |
| KRH24697 | Soybean | nucleus, plastid | 50.0 | 49.56 |
| CDY12025 | Canola | nucleus | 42.01 | 49.48 |
| CDY03134 | Canola | nucleus | 41.72 | 49.13 |
| CDX97995 | Canola | nucleus | 42.9 | 47.08 |
| CDY19385 | Canola | nucleus | 42.31 | 47.04 |
| TraesCS7A01G404400.1 | Wheat | nucleus | 50.89 | 46.74 |
| TraesCS7B01G304000.1 | Wheat | nucleus | 50.59 | 46.22 |
| TraesCS7D01G397800.1 | Wheat | nucleus | 50.59 | 46.22 |
| Zm00001d036812_P001 | Maize | nucleus | 51.18 | 44.47 |
| Zm00001d046774_P001 | Maize | nucleus | 51.78 | 43.97 |
| EER88644 | Sorghum | nucleus, plastid | 52.07 | 43.56 |
| CDY26642 | Canola | nucleus | 37.87 | 43.24 |
| CDX93575 | Canola | nucleus | 42.9 | 43.03 |
| CDX95075 | Canola | nucleus | 42.9 | 42.9 |
| CDY22690 | Canola | nucleus | 41.42 | 41.54 |
| CDY06308 | Canola | nucleus | 40.83 | 40.95 |
| Os06t0612300-01 | Rice | endoplasmic reticulum, vacuole | 52.96 | 40.22 |
| CDY09179 | Canola | nucleus | 20.41 | 21.3 |
| CDY12041 | Canola | nucleus | 23.67 | 19.56 |
| CDY26965 | Canola | nucleus | 20.71 | 19.13 |
| CDY26966 | Canola | nucleus | 21.01 | 18.88 |
| CDY69109 | Canola | nucleus | 20.71 | 18.82 |
| CDX98183 | Canola | nucleus | 20.71 | 18.62 |
| CDY31715 | Canola | nucleus | 20.71 | 18.62 |
| CDX74505 | Canola | nucleus | 20.71 | 18.62 |
| CDY09178 | Canola | nucleus | 19.82 | 18.16 |
| CDY03148 | Canola | nucleus | 23.08 | 18.1 |
| CDY46467 | Canola | nucleus | 23.08 | 15.98 |
| CDX91774 | Canola | nucleus | 23.08 | 15.73 |
Protein Annotations
| EnsemblPlants:CDY25224 | EnsemblPlantsGene:GSBRNA2T00029192001 | Gene3D:3.30.160.60 | GO:A0A078GIX5 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF61 |
| PFscan:PS50157 | ProteinID:CDY25224 | ProteinID:CDY25224.1 | ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 |
| UniParc:UPI0004EB5B8F | UniProt:A0A078GIX5 | MapMan:15.5.15 | : | : | : |
Description
BnaC06g04490DBnaC06g04490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GIX5]
Coordinates
chrLK032170:-:589393..591432
Molecular Weight (calculated)
38504.5 Da
IEP (calculated)
6.626
GRAVY (calculated)
-0.870
Length
338 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNPAYSNLF NNGFDNTNFN CSTSPSYIYN SHNSFYYPNT TNPNYMAPTT STFPNSPPLK EALPLLSLSP IRHQEQQDQH YFMDTDQISS SKFLDYPHDV
101: TVDLHLGLPN YGVGGSYIAP VATTDEQDDD QGVEVTVDSH LHDDDDGDLH RDHYYWIPTP DQILMGPTQF SCPLCFKTFN RYNNMQMHMW GHGSQYRKGP
201: ESLRGTQPTG MLRLPCYCCA PGCKNNIDHP RTKPLKDFRT LQTHYKRKHG SRPFACRRCG KAFAVKGDWR THEKNCGKLW YCSCGSDFKH KRSLKDHVKA
301: FGNGHISCGI DNFGGDHEDY YESASDIAQQ DDCNTNEC
101: TVDLHLGLPN YGVGGSYIAP VATTDEQDDD QGVEVTVDSH LHDDDDGDLH RDHYYWIPTP DQILMGPTQF SCPLCFKTFN RYNNMQMHMW GHGSQYRKGP
201: ESLRGTQPTG MLRLPCYCCA PGCKNNIDHP RTKPLKDFRT LQTHYKRKHG SRPFACRRCG KAFAVKGDWR THEKNCGKLW YCSCGSDFKH KRSLKDHVKA
301: FGNGHISCGI DNFGGDHEDY YESASDIAQQ DDCNTNEC
001: MSNPACSNLF NNGCDHNSFN YSTSLSYIYN SHGSYYYSNT TNPNYINHTH TTSTSPNSPP LREALPLLSL SPIRHQEQQD QHYFMDTHQI SSSNFLDDPL
101: VTVDLHLGLP NYGVGESIRS NIAPDATTDE QDQDHDRGVE VTVESHLDDD DDHHGDLHRG HHYWIPTPSQ ILIGPTQFTC PLCFKTFNRY NNMQMHMWGH
201: GSQYRKGPES LRGTQPTGML RLPCFCCAPG CKNNIDHPRA KPLKDFRTLQ THYKRKHGSK PFACRMCGKA FAVKGDWRTH EKNCGKLWYC SCGSDFKHKR
301: SLKDHVKAFG NGHVPCGIDS FGGDHEDYYD AASDIEQ
101: VTVDLHLGLP NYGVGESIRS NIAPDATTDE QDQDHDRGVE VTVESHLDDD DDHHGDLHRG HHYWIPTPSQ ILIGPTQFTC PLCFKTFNRY NNMQMHMWGH
201: GSQYRKGPES LRGTQPTGML RLPCFCCAPG CKNNIDHPRA KPLKDFRTLQ THYKRKHGSK PFACRMCGKA FAVKGDWRTH EKNCGKLWYC SCGSDFKHKR
301: SLKDHVKAFG NGHVPCGIDS FGGDHEDYYD AASDIEQ
Arabidopsis Description
WIP5Zinc finger protein WIP5 [Source:UniProtKB/Swiss-Prot;Acc:Q8W031]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.