Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030450.1-P | Field mustard | nucleus | 95.58 | 95.29 |
| CDY29624 | Canola | nucleus | 95.58 | 95.29 |
| CDY22834 | Canola | nucleus, plastid | 88.79 | 89.05 |
| CDY25224 | Canola | nucleus | 87.61 | 87.87 |
| AT1G51220.1 | Thale cress | nucleus | 84.96 | 85.46 |
| CDY06390 | Canola | nucleus | 67.85 | 68.86 |
| CDY27556 | Canola | nucleus | 72.27 | 68.44 |
| CDY57920 | Canola | nucleus | 72.27 | 68.25 |
| CDY57608 | Canola | nucleus | 46.31 | 65.42 |
| CDX67704 | Canola | nucleus | 46.9 | 64.63 |
| Solyc11g062060.1.1 | Tomato | nucleus | 48.08 | 62.45 |
| GSMUA_Achr9P12600_001 | Banana | nucleus | 54.57 | 59.49 |
| GSMUA_Achr3P03850_001 | Banana | plastid | 53.39 | 56.04 |
| VIT_06s0004g01870.t01 | Wine grape | nucleus | 55.16 | 55.99 |
| GSMUA_Achr4P01560_001 | Banana | nucleus | 52.21 | 54.97 |
| GSMUA_Achr6P03470_001 | Banana | nucleus | 51.62 | 54.86 |
| GSMUA_Achr8P25650_001 | Banana | nucleus, plastid | 48.38 | 54.67 |
| GSMUA_AchrUn_... | Banana | plastid | 52.21 | 54.13 |
| CDX72006 | Canola | nucleus | 59.29 | 53.89 |
| KRH10191 | Soybean | nucleus, plastid | 54.57 | 53.62 |
| PGSC0003DMT400035408 | Potato | nucleus | 54.57 | 53.31 |
| CDY06083 | Canola | nucleus | 58.7 | 53.21 |
| CDX88959 | Canola | nucleus | 56.93 | 53.02 |
| GSMUA_AchrUn_... | Banana | nucleus | 53.1 | 52.33 |
| KRH23146 | Soybean | nucleus, plastid | 53.39 | 51.71 |
| GSMUA_Achr3P11050_001 | Banana | cytosol, nucleus, plastid | 51.33 | 51.03 |
| KRH29701 | Soybean | nucleus | 50.44 | 50.15 |
| KRH24697 | Soybean | nucleus, plastid | 50.44 | 50.15 |
| CDY03134 | Canola | nucleus | 41.59 | 49.13 |
| CDY12025 | Canola | nucleus | 41.3 | 48.78 |
| CDX97995 | Canola | nucleus | 43.07 | 47.4 |
| CDY19385 | Canola | nucleus | 42.48 | 47.37 |
| TraesCS7A01G404400.1 | Wheat | nucleus | 51.33 | 47.28 |
| TraesCS7D01G397800.1 | Wheat | nucleus | 51.33 | 47.03 |
| TraesCS7B01G304000.1 | Wheat | nucleus | 51.33 | 47.03 |
| Zm00001d036812_P001 | Maize | nucleus | 50.44 | 43.96 |
| CDY26642 | Canola | nucleus | 38.05 | 43.58 |
| Zm00001d046774_P001 | Maize | nucleus | 51.03 | 43.47 |
| CDX93575 | Canola | nucleus | 42.77 | 43.03 |
| CDX95075 | Canola | nucleus | 42.77 | 42.9 |
| EER88644 | Sorghum | nucleus, plastid | 51.03 | 42.82 |
| CDY22690 | Canola | nucleus | 41.89 | 42.14 |
| CDY06308 | Canola | nucleus | 41.59 | 41.84 |
| Os06t0612300-01 | Rice | endoplasmic reticulum, vacuole | 52.51 | 40.0 |
| CDY09179 | Canola | nucleus | 21.24 | 22.22 |
| CDY69109 | Canola | nucleus | 22.12 | 20.16 |
| CDY12041 | Canola | nucleus | 24.19 | 20.05 |
| CDY26966 | Canola | nucleus | 22.12 | 19.95 |
| CDY26965 | Canola | nucleus | 21.53 | 19.95 |
| CDX98183 | Canola | nucleus | 21.83 | 19.68 |
| CDY31715 | Canola | nucleus | 21.83 | 19.68 |
| CDX74505 | Canola | nucleus | 21.83 | 19.68 |
| CDY09178 | Canola | nucleus | 20.94 | 19.24 |
| CDY03148 | Canola | nucleus | 23.3 | 18.33 |
| CDY46467 | Canola | nucleus | 23.6 | 16.39 |
| CDX91774 | Canola | nucleus | 23.6 | 16.13 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | GO:A0A078HAZ5 | UniProt:A0A078HAZ5 | EnsemblPlants:CDY35565 | ProteinID:CDY35565 |
| ProteinID:CDY35565.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00058878001 | InterPro:IPR013087 |
| ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF61 | SUPFAM:SSF57667 | UniParc:UPI0004EE3C48 |
| InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg | : | : | : |
Description
BnaC05g27160DBnaC05g27160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HAZ5]
Coordinates
chrLK032355:+:76576..82588
Molecular Weight (calculated)
38627.6 Da
IEP (calculated)
6.866
GRAVY (calculated)
-0.914
Length
339 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNPACSNLF NNGFDNTNFN YSTPLSYIYN SQNSFYHPDT TNPNYMSPTT TTSTFPNSPP LREALPLLSL SPIRHQEQQD QTYFLNTNHT SSSNFHDVTV
101: DLHLGLPNYR AGGSYIAPEA TTEEQDQDHD QEVEVTLSHL HDDDDHHGDL YRGHNYWIPT PAQILIGPTQ FSCPLCFKTF NRYNNMQMHM WGHGSQYRKG
201: PESLRGTQPT GMLRLPCFCC APGCKNNIDH PRGKPLKDFR TLQTHYKRKH GSRPFACRRC GKAFAVKGDW RTHEKNCGKL WYCSCGSDFK HKRSLKDHVK
301: AFGNGHVPCG IDSFGGDHED YYEAASDIEQ QDDCNNNEC
101: DLHLGLPNYR AGGSYIAPEA TTEEQDQDHD QEVEVTLSHL HDDDDHHGDL YRGHNYWIPT PAQILIGPTQ FSCPLCFKTF NRYNNMQMHM WGHGSQYRKG
201: PESLRGTQPT GMLRLPCFCC APGCKNNIDH PRGKPLKDFR TLQTHYKRKH GSRPFACRRC GKAFAVKGDW RTHEKNCGKL WYCSCGSDFK HKRSLKDHVK
301: AFGNGHVPCG IDSFGGDHED YYEAASDIEQ QDDCNNNEC
001: MSNPACSNLF NNGCDHNSFN YSTSLSYIYN SHGSYYYSNT TNPNYINHTH TTSTSPNSPP LREALPLLSL SPIRHQEQQD QHYFMDTHQI SSSNFLDDPL
101: VTVDLHLGLP NYGVGESIRS NIAPDATTDE QDQDHDRGVE VTVESHLDDD DDHHGDLHRG HHYWIPTPSQ ILIGPTQFTC PLCFKTFNRY NNMQMHMWGH
201: GSQYRKGPES LRGTQPTGML RLPCFCCAPG CKNNIDHPRA KPLKDFRTLQ THYKRKHGSK PFACRMCGKA FAVKGDWRTH EKNCGKLWYC SCGSDFKHKR
301: SLKDHVKAFG NGHVPCGIDS FGGDHEDYYD AASDIEQ
101: VTVDLHLGLP NYGVGESIRS NIAPDATTDE QDQDHDRGVE VTVESHLDDD DDHHGDLHRG HHYWIPTPSQ ILIGPTQFTC PLCFKTFNRY NNMQMHMWGH
201: GSQYRKGPES LRGTQPTGML RLPCFCCAPG CKNNIDHPRA KPLKDFRTLQ THYKRKHGSK PFACRMCGKA FAVKGDWRTH EKNCGKLWYC SCGSDFKHKR
301: SLKDHVKAFG NGHVPCGIDS FGGDHEDYYD AASDIEQ
Arabidopsis Description
WIP5Zinc finger protein WIP5 [Source:UniProtKB/Swiss-Prot;Acc:Q8W031]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.