Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019822.1-P | Field mustard | nucleus | 96.05 | 94.81 |
| CDX97995 | Canola | nucleus | 96.05 | 94.81 |
| AT1G13290.1 | Thale cress | nucleus | 84.54 | 85.1 |
| PGSC0003DMT400096573 | Potato | cytosol, mitochondrion, nucleus, peroxisome | 36.84 | 73.2 |
| CDY26642 | Canola | nucleus | 70.07 | 71.96 |
| VIT_01s0011g03100.t01 | Wine grape | nucleus | 56.25 | 62.18 |
| KRH34760 | Soybean | nucleus | 51.97 | 57.88 |
| CDY57608 | Canola | nucleus | 45.39 | 57.5 |
| Solyc05g009770.1.1 | Tomato | nucleus | 53.95 | 57.34 |
| KRG92027 | Soybean | nucleus | 50.99 | 56.57 |
| CDX67704 | Canola | nucleus | 45.72 | 56.5 |
| GSMUA_Achr6P21380_001 | Banana | nucleus | 43.75 | 56.12 |
| KRH70598 | Soybean | nucleus | 58.55 | 53.29 |
| KRH75477 | Soybean | nucleus | 57.57 | 52.71 |
| GSMUA_Achr6P01410_001 | Banana | nucleus | 48.03 | 51.96 |
| TraesCS5B01G177600.1 | Wheat | nucleus, plastid | 49.34 | 47.47 |
| CDY12025 | Canola | nucleus | 44.08 | 46.69 |
| CDY03134 | Canola | nucleus | 43.42 | 45.99 |
| CDX88959 | Canola | nucleus | 51.64 | 43.13 |
| TraesCS5D01G184400.1 | Wheat | nucleus | 50.33 | 43.1 |
| CDX72006 | Canola | nucleus | 52.63 | 42.9 |
| TraesCS5A01G179800.1 | Wheat | nucleus | 50.0 | 42.82 |
| CDY06390 | Canola | nucleus | 47.04 | 42.81 |
| CDY29624 | Canola | nucleus | 47.7 | 42.65 |
| CDY06083 | Canola | nucleus | 52.3 | 42.51 |
| CDY35565 | Canola | nucleus | 47.37 | 42.48 |
| CDY22834 | Canola | nucleus, plastid | 47.04 | 42.31 |
| CDY25224 | Canola | nucleus | 47.04 | 42.31 |
| CDY57920 | Canola | nucleus | 48.68 | 41.23 |
| EER96535 | Sorghum | nucleus | 49.67 | 40.81 |
| CDY27556 | Canola | nucleus | 48.03 | 40.78 |
| CDY22690 | Canola | nucleus | 44.41 | 40.06 |
| CDX93575 | Canola | nucleus | 44.08 | 39.76 |
| CDY06308 | Canola | nucleus | 44.08 | 39.76 |
| CDX95075 | Canola | nucleus | 44.08 | 39.65 |
| Zm00001d005566_P001 | Maize | nucleus | 49.34 | 39.58 |
| Zm00001d020037_P001 | Maize | nucleus | 48.68 | 39.36 |
| Os09t0307400-00 | Rice | nucleus | 50.33 | 38.83 |
| GSMUA_Achr5P09960_001 | Banana | endoplasmic reticulum, nucleus, plastid | 50.0 | 35.27 |
| CDY09179 | Canola | nucleus | 21.71 | 20.37 |
| CDY26966 | Canola | nucleus | 23.03 | 18.62 |
| CDY26965 | Canola | nucleus | 22.04 | 18.31 |
| CDY69109 | Canola | nucleus | 22.04 | 18.01 |
| CDY09178 | Canola | nucleus | 21.71 | 17.89 |
| CDY31715 | Canola | nucleus | 22.04 | 17.82 |
| CDX98183 | Canola | nucleus | 22.04 | 17.82 |
| CDX74505 | Canola | nucleus | 22.04 | 17.82 |
| CDY12041 | Canola | nucleus | 23.36 | 17.36 |
| CDY03148 | Canola | nucleus | 22.7 | 16.01 |
| CDY46467 | Canola | nucleus | 22.7 | 14.14 |
| CDX91774 | Canola | nucleus | 22.7 | 13.91 |
Protein Annotations
| MapMan:15.5.15 | GO:A0A078FYB7 | UniProt:A0A078FYB7 | EnsemblPlants:CDY19385 | ProteinID:CDY19385 | ProteinID:CDY19385.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00008923001 | InterPro:IPR013087 | ScanProsite:PS00028 |
| PFscan:PS50157 | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF52 | SUPFAM:SSF57667 | UniParc:UPI0004EDE5E7 | InterPro:Znf_C2H2_sf |
| InterPro:Znf_C2H2_type | SEG:seg | : | : | : | : |
Description
BnaC05g08940DBnaC05g08940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FYB7]
Coordinates
chrLK032095:+:465625..467025
Molecular Weight (calculated)
34480.9 Da
IEP (calculated)
7.351
GRAVY (calculated)
-1.063
Length
304 amino acids
Sequence
(BLAST)
(BLAST)
001: MFNNNQYCIS GDEDSVVLRL GPPNQQYRNN YKSTSTKPST NHEIDHNLPL TNPNDVTVAL HIGPPVSEKE TSGNHEGLTA RQGQYWIPSL SQILVGPTQF
101: SCSVCNKTFN RFNNMQMHMW GHGSQYRKGP ESLRGTKSSS SILRLPCYCC AEGCKNNIGH PRAKPLKDFR TLQTHYKRKH GAKPFRCRKK CEKTFAVRGD
201: WRTHEKNCGK VWFCVCGSDF KHKRSLKDHV RAFGDGHAAH TVGDRVVSIG EGDGDDDDDD FMEEEDERDD DEEEDGNGES GRGEKNYGIR YEHFGRYGQI
301: SNDN
101: SCSVCNKTFN RFNNMQMHMW GHGSQYRKGP ESLRGTKSSS SILRLPCYCC AEGCKNNIGH PRAKPLKDFR TLQTHYKRKH GAKPFRCRKK CEKTFAVRGD
201: WRTHEKNCGK VWFCVCGSDF KHKRSLKDHV RAFGDGHAAH TVGDRVVSIG EGDGDDDDDD FMEEEDERDD DEEEDGNGES GRGEKNYGIR YEHFGRYGQI
301: SNDN
001: MYNNNQYSFS GDEDSVVLSL GPPGQQYPSH NKPTSTKPSS DHEFNHPLTN PNGVTVALHI GPPSSDKETL SGGNNQEGLT ARQGQYWIPS LSQILVGPTQ
101: FSCSVCNKTF NRFNNMQMHM WGHGSQYRKG PESLRGTKSS SSILRLPCYC CAEGCKNNID HPRSKPLKDF RTLQTHYKRK HGAKPFRCRK KCEKTFAVRG
201: DWRTHEKNCG KLWFCVCGSD FKHKRSLKDH VRAFGDGHAA HTVSDRVVGI GDADEDDEEE EEEEEDDVEE EDAHEENVRG EKNYGIRYDH FRRYGQISDD
301: NY
101: FSCSVCNKTF NRFNNMQMHM WGHGSQYRKG PESLRGTKSS SSILRLPCYC CAEGCKNNID HPRSKPLKDF RTLQTHYKRK HGAKPFRCRK KCEKTFAVRG
201: DWRTHEKNCG KLWFCVCGSD FKHKRSLKDH VRAFGDGHAA HTVSDRVVGI GDADEDDEEE EEEEEDDVEE EDAHEENVRG EKNYGIRYDH FRRYGQISDD
301: NY
Arabidopsis Description
WIP6Zinc finger protein WIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX68]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.