CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020037_P001	Maize	nucleus	90.81	89.36
TraesCS5B01G177600.1	Wheat	nucleus, plastid	65.95	77.22
TraesCS5D01G184400.1	Wheat	nucleus	73.51	76.62
TraesCS5A01G179800.1	Wheat	nucleus	72.7	75.77
PGSC0003DMT400096573	Potato	cytosol, mitochondrion, nucleus, peroxisome	28.11	67.97
Os09t0307400-00	Rice	nucleus	68.38	64.21
GSMUA_Achr6P01410_001	Banana	nucleus	47.03	61.92
VIT_01s0011g03100.t01	Wine grape	nucleus	42.43	57.09
KRH34760	Soybean	nucleus	39.19	53.11
Solyc05g009770.1.1	Tomato	nucleus	40.54	52.45
KRG92027	Soybean	nucleus	38.38	51.82
KRH75477	Soybean	nucleus	44.59	49.7
Bra019822.1-P	Field mustard	nucleus	41.35	49.68
CDX97995	Canola	nucleus	41.35	49.68
CDY19385	Canola	nucleus	40.81	49.67
AT1G13290.1	Thale cress	nucleus	40.54	49.67
KRH70598	Soybean	nucleus	43.78	48.5
CDY26642	Canola	nucleus	37.84	47.3
GSMUA_Achr5P09960_001	Banana	endoplasmic reticulum, nucleus, plastid	51.89	44.55
EER98623	Sorghum	plastid	35.14	41.27
EER88644	Sorghum	nucleus, plastid	39.46	36.14
EES18308	Sorghum	plastid	36.22	33.25
EES03920	Sorghum	plastid	35.41	32.51
EES15412	Sorghum	nucleus	37.3	32.24
EER96965	Sorghum	cytosol, mitochondrion, nucleus, plastid	38.38	31.49
KXG37177	Sorghum	nucleus	21.62	20.2
OQU85186	Sorghum	nucleus	18.38	18.68
OQU80698	Sorghum	nucleus	20.27	17.65
KXG33778	Sorghum	nucleus	19.73	14.07

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	EntrezGene:8064680	UniProt:C5X919	EnsemblPlants:EER96535	ProteinID:EER96535
ProteinID:EER96535.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007275	GO:GO:0008150	GO:GO:0009653
GO:GO:0009790	GO:GO:0009791	GO:GO:0010087	GO:GO:0010305	GO:GO:0010588	GO:GO:0048364
GO:GO:0048367	InterPro:IPR013087	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR10593	PANTHER:PTHR10593:SF52
SMART:SM00355	EnsemblPlantsGene:SORBI_3002G164700	SUPFAM:SSF57667	UniParc:UPI0001A8387C	RefSeq:XP_002460014.1	InterPro:Znf_C2H2_sf
InterPro:Znf_C2H2_type	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:51241045..51242948

Molecular Weight (calculated)

39808.2 Da

IEP (calculated)

7.171

GRAVY (calculated)

-0.532

Length

370 amino acids

Sequence
(BLAST)

001: MHSYRAMHPY THPYQHHTAA VAPTKHGHGH GEEEDDQSML LLSLWPPGQH HGIAAASSAC SSPPICATTT TTTSMAAAAS YPWLTTHQSH YNGGCGGGSS
101: SSSHSSFLFH EHQQQEPDVS ISLSIAPPCS NTAASCGAAA GGFAAPAAPS TVTTVTPGGS QVPSQYWIPS AAEILVGSTQ FSCAVCNKTF NRFNNMQMHM
201: WGHGSQYRKG SESLRGAITV GTAPPASLMR LPCYCCAEGC RNNIEHPRAR PLKDFRTLQT HYRRKHGARP YACRRCGKRF AVRGDWRTHE KNCGKLWFCV
301: CGSDFKHKRS LKDHVRSFGG GHAPHIVESV AVEDDEEDDD DHDDADLHAF DDNVGNGGGA GGEPSDMVVV

Best Arabidopsis Sequence Match ( AT1G13290.1 )
(BLAST)

001: MYNNNQYSFS GDEDSVVLSL GPPGQQYPSH NKPTSTKPSS DHEFNHPLTN PNGVTVALHI GPPSSDKETL SGGNNQEGLT ARQGQYWIPS LSQILVGPTQ
101: FSCSVCNKTF NRFNNMQMHM WGHGSQYRKG PESLRGTKSS SSILRLPCYC CAEGCKNNID HPRSKPLKDF RTLQTHYKRK HGAKPFRCRK KCEKTFAVRG
201: DWRTHEKNCG KLWFCVCGSD FKHKRSLKDH VRAFGDGHAA HTVSDRVVGI GDADEDDEEE EEEEEDDVEE EDAHEENVRG EKNYGIRYDH FRRYGQISDD
301: NY

Arabidopsis Description

WIP6Zinc finger protein WIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX68]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.