CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034783_P001	Maize	nucleus	78.03	84.43
Os03t0838800-00	Rice	nucleus	59.34	64.03
TraesCS4A01G352700.1	Wheat	nucleus	56.31	53.35
TraesCS5D01G519100.1	Wheat	nucleus	55.3	53.16
TraesCS5B01G519700.1	Wheat	nucleus	55.56	53.01
OQU85186	Sorghum	nucleus	32.83	35.71
KXG33778	Sorghum	nucleus	44.19	33.72
OQU80698	Sorghum	nucleus	30.05	28.0
EER98623	Sorghum	plastid	17.42	21.9
EER96535	Sorghum	nucleus	20.2	21.62
EES15412	Sorghum	nucleus	21.46	19.86
EER88644	Sorghum	nucleus, plastid	20.2	19.8
EES18308	Sorghum	plastid	19.95	19.6
EER96965	Sorghum	cytosol, mitochondrion, nucleus, plastid	20.96	18.4
EES03920	Sorghum	plastid	18.43	18.11

Protein Annotations

EnsemblPlants:KXG37177	EnsemblPlantsGene:SORBI_3001G020200	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF71	PFAM:PF00096
PFscan:PS50157	ProteinID:KXG37177	ProteinID:KXG37177.1	ScanProsite:PS00028	SEG:seg	SMART:SM00355
SUPFAM:SSF57667	UniParc:UPI0003C6D3DB	UniProt:A0A1B6QH06	MapMan:15.5.15	:	:

Description

hypothetical protein

Coordinates

chr1:-:1675201..1676391

Molecular Weight (calculated)

42347.6 Da

IEP (calculated)

5.404

GRAVY (calculated)

-0.403

Length

396 amino acids

Sequence
(BLAST)

001: MEVCNLGNNA MEAQQQREQS QAGGCTDDDP AAVLTCLTFL EQKIAHLRAI IGAAPRPPRQ MVSAELSCIA VQLVSISKSL AATGGGGAAA ADQDDGAARS
101: PAPNDGDSDS SDHDLLHAED DYGDGDGDSD GRMPPAGSYE VIELGKEEIL APHVHSCKVC GKGFKRDANL RMHMRGHGEE YKTAAALAKP ASAPSSSLAR
201: CFYSCPFVGC KRNREHRSFQ PLKTAVCVKN HYRRSHCDKS YTCRRCNVKR FSVLADLRTH EKHCGRDRWV CSCGTSFSRK DKLFGHVAAF DGHAPALPPE
301: DDDAVTNAVG LGTGSGRLTT MDTEAVSRMA SMEFFPDAVL DGLVCSDIKG FALMDGGQGQ YLEDDDGRGS LSPLPMGLDS CDFDGFDLFG APAIDF

Best Arabidopsis Sequence Match ( AT1G34370.2 )
(BLAST)

001: METEDDLCNT NWGSSSSKSR EPGSSDCGNS TFAGFTSQQK WEDASILDYE MGVEPGLQES IQANVDFLQG VRAQAWDPRT MLSNLSFMEQ KIHQLQDLVH
101: LLVGRGGQLQ GRQDELAAQQ QQLITTDLTS IIIQLISTAG SLLPSVKHNM STAPGPFTGQ PGSAVFPYVR EANNVASQSQ NNNNCGAREF DLPKPVLVDE
201: REGHVVEEHE MKDEDDVEEG ENLPPGSYEI LQLEKEEILA PHTHFCTICG KGFKRDANLR MHMRGHGDEY KTAAALAKPN KESVPGSEPM LIKRYSCPFL
301: GCKRNKEHKK FQPLKTILCV KNHYKRTHCD KSFTCSRCHT KKFSVIADLK THEKHCGKNK WLCSCGTTFS RKDKLFGHIA LFQGHTPAIP LEETKPSAST
401: STQRGSSEGG NNNQGMVGFN LGSASNANQE TTQPGMTDGR ICFEESFSPM NFDTCNFGGF HEFPRLMFDD SESSFQMLIA NACGFSPRNV GESVSDTSL

Arabidopsis Description

STOP1Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8N5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.