CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052883_P001	Maize	nucleus	86.92	89.64
Zm00001d031416_P001	Maize	nucleus	88.32	89.36
Os08t0504000-01	Rice	nucleus	67.29	65.75
EER96965	Sorghum	cytosol, mitochondrion, nucleus, plastid	57.48	54.55
EER98623	Sorghum	plastid	36.68	49.84
EER88644	Sorghum	nucleus, plastid	46.96	49.75
EES18308	Sorghum	plastid	35.98	38.21
EER96535	Sorghum	nucleus	32.24	37.3
EES03920	Sorghum	plastid	35.05	37.22
KXG37177	Sorghum	nucleus	19.86	21.46
OQU85186	Sorghum	nucleus	16.59	19.51
KXG33778	Sorghum	nucleus	18.93	15.61
OQU80698	Sorghum	nucleus	15.42	15.53

Protein Annotations

EnsemblPlants:EES15412	EnsemblPlantsGene:SORBI_3007G212900	EntrezGene:8055191	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF68
PFscan:PS50157	ProteinID:EES15412	ProteinID:EES15412.1	RefSeq:XP_002445917.1	ScanProsite:PS00028	SEG:seg
SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI0001A87A44	UniProt:C5YJ42	MapMan:15.5.15	:

Description

hypothetical protein

Coordinates

chr7:-:64162461..64165954

Molecular Weight (calculated)

46192.1 Da

IEP (calculated)

6.447

GRAVY (calculated)

-0.516

Length

428 amino acids

Sequence
(BLAST)

001: MEDPYRSFFK NSYYYYASSY PAAPAPHHLP PSLPPYTSLY PAAAAPQYHP ACFFQPPPPS SLPPLHDSPP SPPLREALPL LSQSPTRAAS RAQPRPHVAV
101: DSDSEDDADD FVLREAVGSS VTPSTRAPLF ADLNCMPSCC DAEGDPMDLE AAAPTDDDAA VALRIGLPPA PVNGGCGGAE ADLLSGLSGR AGCGGMEHEE
201: DEDECKVDTG DGDEVVPLGF ASTPIGKLNK GQYWIPTPAQ ILIGPTQFSC PVCYKTFNRY NNMQMHMWGH GSQYRKGPES LRGVQPTAML RLPCYCCAPG
301: CRNNIDHPRA RPLKDFRTLQ THYKRKHGLK PFLCRKCGKA FAVKGDWRTH EKNCGKLWYC LCGSEFKHKR SLKDHARAFG HGHGAFGCNL DGGSGADGLD
401: DDDDGAVSEI EHDLCAAACS SRSAAAAR

Best Arabidopsis Sequence Match ( AT3G57670.1 )
(BLAST)

001: MTDPYSNFFT DWFKSNPFHH YPNSSTNPSP HPLPPVTPPS SFFFFPQSGD LRRPPPPPTP PPSPPLREAL PLLSLSPANK QQDHHHNHDH LIQEPPSTSM
101: DVDYDHHHQD DHHNLDDDDH DVTVALHIGL PSPSAQEMAS LLMMSSSSSS SRTTHHHEDM NHKKDLDHEY SHGAVGGGED DDEDSVGGDG GCRISRLNKG
201: QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP
301: FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS LKDHIKAFGN GHGAYGIDGF DEEDEPASEV EQLDNDHESM QSK

Arabidopsis Description

WIP2WIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VLW5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.