Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os09t0485600-01 | Rice | cytosol, mitochondrion, nucleus | 30.37 | 86.36 |
| Os09t0282100-00 | Rice | cytosol, mitochondrion, nucleus | 23.06 | 70.14 |
| EES15412 | Sorghum | nucleus | 65.75 | 67.29 |
| Zm00001d031416_P001 | Maize | nucleus | 64.61 | 66.9 |
| Zm00001d052883_P001 | Maize | nucleus | 63.24 | 66.75 |
| Os02t0196100-01 | Rice | cytosol, extracellular, nucleus | 29.68 | 59.09 |
| Os06t0612300-01 | Rice | endoplasmic reticulum, vacuole | 46.58 | 45.84 |
| Os01t0859100-01 | Rice | nucleus, plastid | 33.79 | 39.36 |
| Os05t0444200-01 | Rice | plastid | 34.47 | 38.82 |
| Os09t0307400-00 | Rice | nucleus | 30.59 | 34.01 |
| Os09t0282300-00 | Rice | nucleus | 12.79 | 32.56 |
| Os03t0838800-00 | Rice | nucleus | 17.35 | 20.71 |
| Os04t0165200-01 | Rice | nucleus | 15.98 | 18.87 |
| Os08t0562300-01 | Rice | nucleus | 16.44 | 18.7 |
| Os02t0572900-01 | Rice | cytosol, extracellular, nucleus | 15.75 | 17.97 |
| Os12t0170400-01 | Rice | nucleus | 17.12 | 16.13 |
| Os01t0871200-03 | Rice | nucleus | 17.58 | 14.75 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | EntrezGene:9271702 | ProteinID:BAD08819.1 | ProteinID:BAD09281.1 | ProteinID:BAT06141.1 |
| ProteinID:EAZ43260.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR013087 | EnsemblPlantsGene:Os08g0504000 |
| EnsemblPlants:Os08t0504000-01 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF68 | UniProt:Q6ZFH4 |
| SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI000023AC19 | RefSeq:XP_015649538.1 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type |
| SEG:seg | : | : | : | : | : |
Description
Similar to WIP5 protein. (Os08t0504000-01)
Coordinates
chr8:+:24905368..24908959
Molecular Weight (calculated)
46682.5 Da
IEP (calculated)
6.379
GRAVY (calculated)
-0.450
Length
438 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDPYTSFFK NPYYYYCTSA SSFPTAPAAA AAAAHLPPPL PPPYAALYPT AGGVGVGVGA HHHHQYPPAA FFHPPPVHQQ HQAPPSPPLR EALPLLSLSP
101: TPARRGGVVD AAADSDSDDD DDGDCCYHHL QDQEGAAAGS TATPAAAAAR APLFADLNCI PTCCGDDNDG GDPMDVEVAG TTADIDAAVA LRIGLPAGGT
201: EADLLSGLTG AGVEHEEEEE DCKVDGGGSG GDDEVVPLGF SSTPIGKLNK GQYWIPTPSQ ILIGPTQFSC PVCFKTFNRY NNMQMHMWGH GSQYRKGPES
301: LRGVQPTAML RLPCYCCAAG CRNNIDHPRA RPLKDFRTLQ THYKRKHGLK PFLCRKCGKA FAVKGDWRTH EKNCGKLWYC LCGSEFKHKR SLKDHARAFG
401: HAHTALDADD DDGAVSDADA VVRPSSSMAA SSLQPPPR
101: TPARRGGVVD AAADSDSDDD DDGDCCYHHL QDQEGAAAGS TATPAAAAAR APLFADLNCI PTCCGDDNDG GDPMDVEVAG TTADIDAAVA LRIGLPAGGT
201: EADLLSGLTG AGVEHEEEEE DCKVDGGGSG GDDEVVPLGF SSTPIGKLNK GQYWIPTPSQ ILIGPTQFSC PVCFKTFNRY NNMQMHMWGH GSQYRKGPES
301: LRGVQPTAML RLPCYCCAAG CRNNIDHPRA RPLKDFRTLQ THYKRKHGLK PFLCRKCGKA FAVKGDWRTH EKNCGKLWYC LCGSEFKHKR SLKDHARAFG
401: HAHTALDADD DDGAVSDADA VVRPSSSMAA SSLQPPPR
001: MTDPYSNFFT DWFKSNPFHH YPNSSTNPSP HPLPPVTPPS SFFFFPQSGD LRRPPPPPTP PPSPPLREAL PLLSLSPANK QQDHHHNHDH LIQEPPSTSM
101: DVDYDHHHQD DHHNLDDDDH DVTVALHIGL PSPSAQEMAS LLMMSSSSSS SRTTHHHEDM NHKKDLDHEY SHGAVGGGED DDEDSVGGDG GCRISRLNKG
201: QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP
301: FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS LKDHIKAFGN GHGAYGIDGF DEEDEPASEV EQLDNDHESM QSK
101: DVDYDHHHQD DHHNLDDDDH DVTVALHIGL PSPSAQEMAS LLMMSSSSSS SRTTHHHEDM NHKKDLDHEY SHGAVGGGED DDEDSVGGDG GCRISRLNKG
201: QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP
301: FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS LKDHIKAFGN GHGAYGIDGF DEEDEPASEV EQLDNDHESM QSK
Arabidopsis Description
WIP2WIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VLW5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.