Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0621300-01 | |
| Os02t0258300-01 | |
| Os05t0586400-01 | |
| Os06t0524300-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G22890.1 | Os01t0621300-01 | AT4G01090.1 | 21798944 |
| AT5G22890.1 | Os02t0258300-01 | AT4G01090.1 | 21798944 |
| AT5G22890.1 | Os05t0586400-01 | AT4G01090.1 | 21798944 |
| AT5G22890.1 | Os06t0524300-01 | AT4G01090.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G060200.1 | Wheat | nucleus | 56.62 | 56.77 |
| TraesCS1D01G061200.1 | Wheat | nucleus | 56.36 | 56.07 |
| TraesCS1B01G078700.1 | Wheat | nucleus | 56.62 | 55.61 |
| Zm00001d031895_P001 | Maize | nucleus | 57.66 | 52.98 |
| OQU80698 | Sorghum | nucleus | 58.44 | 52.94 |
| GSMUA_Achr1P15330_001 | Banana | cytosol | 38.44 | 52.67 |
| KRH22822 | Soybean | plastid | 36.1 | 50.0 |
| GSMUA_Achr11P... | Banana | nucleus | 42.86 | 48.53 |
| CDY09179 | Canola | nucleus | 37.92 | 45.06 |
| Os04t0165200-01 | Rice | nucleus | 42.34 | 43.94 |
| PGSC0003DMT400001105 | Potato | nucleus | 35.84 | 43.4 |
| VIT_06s0061g00780.t01 | Wine grape | nucleus | 42.34 | 41.79 |
| AT5G22890.1 | Thale cress | nucleus | 39.74 | 41.02 |
| CDY09178 | Canola | nucleus | 38.18 | 39.84 |
| CDY26965 | Canola | nucleus | 37.4 | 39.34 |
| Solyc11g066420.1.1 | Tomato | nucleus, plastid | 38.7 | 38.8 |
| CDY69109 | Canola | nucleus | 37.4 | 38.71 |
| CDX74505 | Canola | nucleus | 37.4 | 38.3 |
| CDY31715 | Canola | nucleus | 37.4 | 38.3 |
| CDY26966 | Canola | nucleus | 37.4 | 38.3 |
| Bra002438.1-P | Field mustard | nucleus | 37.4 | 38.3 |
| CDX98183 | Canola | nucleus | 37.4 | 38.3 |
| Os09t0282100-00 | Rice | cytosol, mitochondrion, nucleus | 13.25 | 35.42 |
| Os09t0485600-01 | Rice | cytosol, mitochondrion, nucleus | 13.51 | 33.77 |
| Bra020223.1-P | Field mustard | nucleus | 23.64 | 30.64 |
| Os03t0838800-00 | Rice | nucleus | 29.09 | 30.52 |
| Bra020224.1-P | Field mustard | nucleus | 23.38 | 29.9 |
| Os02t0572900-01 | Rice | cytosol, extracellular, nucleus | 28.05 | 28.12 |
| Os02t0196100-01 | Rice | cytosol, extracellular, nucleus | 15.84 | 27.73 |
| Os12t0170400-01 | Rice | nucleus | 31.43 | 26.02 |
| Os01t0871200-03 | Rice | nucleus | 31.43 | 23.18 |
| Os05t0444200-01 | Rice | plastid | 19.74 | 19.54 |
| Os09t0307400-00 | Rice | nucleus | 19.74 | 19.29 |
| Os01t0859100-01 | Rice | nucleus, plastid | 18.7 | 19.15 |
| Bra002437.1-P | Field mustard | nucleus | 12.21 | 18.88 |
| Os08t0504000-01 | Rice | nucleus | 18.7 | 16.44 |
| Os06t0612300-01 | Rice | endoplasmic reticulum, vacuole | 18.96 | 16.4 |
| Os09t0282300-00 | Rice | nucleus | 5.19 | 11.63 |
Protein Annotations
| EnsemblPlants:Os08t0562300-01 | EnsemblPlantsGene:Os08g0562300 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF41 | PFscan:PS50157 |
| ProteinID:BAD09613.1 | ProteinID:BAD13228.1 | ProteinID:BAF24433.1 | ProteinID:BAT06716.1 | ScanProsite:PS00028 | SEG:seg |
| SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI000023AEA3 | UniProt:Q6YYW0 | MapMan:15.5.15 | : |
Description
Zinc finger, C2H2-type domain containing protein. (Os08t0562300-01)
Coordinates
chr8:-:28155221..28156664
Molecular Weight (calculated)
41176.8 Da
IEP (calculated)
8.042
GRAVY (calculated)
-0.435
Length
385 amino acids
Sequence
(BLAST)
(BLAST)
001: MIPGGGGGGG GGGISPYLVQ SQHGHGGGVD GMEMEEGGGF MGEQPQCHPL LYNLSVLKDR VQQLHPLVGL AVAHNAHAHG PLDVSAADAI IQEIVAAASS
101: MMYAFQLLCD LGTAPTTAPS QETAAASAVV VKNNDHAADA GQMEDDHLMQ QQWQQNGSRQ HDYSSHAHAP PVFHSETAAP AGATSATDTI IELDAAELLA
201: KYTHYCQVCG KGFKRDANLR MHMRAHGDEY KSKAALSNPT KLLAKGGDET MAAAARKYSC PQEGCRWNRR HAKFQPLKSV ICAKNHYKRS HCPKMYVCNR
301: CGRKHFSVLS DLRTHEKHCG DHRWLCSCGT SFSRKDKLIG HVSLFAGHQP VMPLDAPRAG KRQRSSSASV AGNIDDTTGI GMGAA
101: MMYAFQLLCD LGTAPTTAPS QETAAASAVV VKNNDHAADA GQMEDDHLMQ QQWQQNGSRQ HDYSSHAHAP PVFHSETAAP AGATSATDTI IELDAAELLA
201: KYTHYCQVCG KGFKRDANLR MHMRAHGDEY KSKAALSNPT KLLAKGGDET MAAAARKYSC PQEGCRWNRR HAKFQPLKSV ICAKNHYKRS HCPKMYVCNR
301: CGRKHFSVLS DLRTHEKHCG DHRWLCSCGT SFSRKDKLIG HVSLFAGHQP VMPLDAPRAG KRQRSSSASV AGNIDDTTGI GMGAA
001: MHIHMMNRDE HIAKKVEGSI SSFSGETSTS SKQIYVNPVT TTGTKSMEDD DVSLSLLYNL STLHEKVHQI QSLVSFYMVS TNNINQSSGS TSLAVANIGS
101: LVQEIITAAS SMLYTCQQLQ IGSNNNNNDI DNDQTVDAMV LEFSRQETDP GHDFVQESTN LFGVQERGQI SFPDQNLDWY NTETINPKKD KHRSKPSSGS
201: YDILELDVAD LLAKYTHYCQ ICGKGFKRDA NLRMHMRAHG DEYKTREALI SPTSQDKKGG YSLKKHYYSC PQHGCRWNQR HEKFQPLKSV ICAKNHYKRS
301: HCPKMYMCRR CSVKHFSVLS DLRTHEKHCG DIKWVCSCGT KFSRKDKLMS HVSLFLGHVP AHGSSKPPTI TLK
101: LVQEIITAAS SMLYTCQQLQ IGSNNNNNDI DNDQTVDAMV LEFSRQETDP GHDFVQESTN LFGVQERGQI SFPDQNLDWY NTETINPKKD KHRSKPSSGS
201: YDILELDVAD LLAKYTHYCQ ICGKGFKRDA NLRMHMRAHG DEYKTREALI SPTSQDKKGG YSLKKHYYSC PQHGCRWNQR HEKFQPLKSV ICAKNHYKRS
301: HCPKMYMCRR CSVKHFSVLS DLRTHEKHCG DIKWVCSCGT KFSRKDKLMS HVSLFLGHVP AHGSSKPPTI TLK
Arabidopsis Description
STOP2Protein SENSITIVE TO PROTON RHIZOTOXICITY 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WT24]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.